Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04725

Experiment: m.b. Lomefloxacin 0.002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04715 and CA264_04720 are separated by 78 nucleotidesCA264_04720 and CA264_04725 are separated by 130 nucleotidesCA264_04725 and CA264_04730 are separated by 100 nucleotidesCA264_04730 and CA264_04735 are separated by 96 nucleotides CA264_04715: CA264_04715 - 3-deoxy-8-phosphooctulonate synthase, at 1,092,540 to 1,093,349 _04715 CA264_04720: CA264_04720 - SAM-dependent methyltransferase, at 1,093,428 to 1,094,171 _04720 CA264_04725: CA264_04725 - Co2+/Mg2+ efflux protein ApaG, at 1,094,302 to 1,094,688 _04725 CA264_04730: CA264_04730 - uracil-DNA glycosylase, at 1,094,789 to 1,095,451 _04730 CA264_04735: CA264_04735 - hypothetical protein, at 1,095,548 to 1,097,092 _04735 Position (kb) 1094 1095Strain fitness (log2 ratio) -2 -1 0 1at 1093.366 kb on + strandat 1093.367 kb on - strandat 1093.369 kb on - strandat 1093.401 kb on + strandat 1093.402 kb on - strandat 1093.403 kb on + strandat 1093.403 kb on + strandat 1093.408 kb on + strandat 1093.430 kb on - strandat 1093.433 kb on - strandat 1094.202 kb on + strandat 1094.219 kb on + strandat 1094.286 kb on + strandat 1094.286 kb on + strandat 1094.286 kb on + strandat 1094.290 kb on - strandat 1094.290 kb on - strandat 1094.292 kb on + strandat 1094.292 kb on + strandat 1094.303 kb on + strandat 1094.315 kb on + strandat 1094.316 kb on - strandat 1094.387 kb on + strand, within CA264_04725at 1094.388 kb on - strand, within CA264_04725at 1094.438 kb on + strand, within CA264_04725at 1094.527 kb on + strand, within CA264_04725at 1094.527 kb on + strand, within CA264_04725at 1094.527 kb on + strand, within CA264_04725at 1094.527 kb on + strand, within CA264_04725at 1094.528 kb on - strand, within CA264_04725at 1094.531 kb on + strand, within CA264_04725at 1094.532 kb on - strand, within CA264_04725at 1094.590 kb on - strand, within CA264_04725at 1094.590 kb on - strand, within CA264_04725at 1094.639 kb on + strand, within CA264_04725at 1094.705 kb on + strandat 1094.711 kb on + strandat 1094.712 kb on - strandat 1094.712 kb on - strandat 1094.712 kb on - strandat 1094.780 kb on - strandat 1094.797 kb on - strandat 1094.802 kb on + strandat 1094.849 kb on + strandat 1094.862 kb on + strand, within CA264_04730at 1094.885 kb on + strand, within CA264_04730at 1094.886 kb on - strand, within CA264_04730at 1094.887 kb on + strand, within CA264_04730at 1094.887 kb on + strand, within CA264_04730at 1094.888 kb on - strand, within CA264_04730at 1094.888 kb on - strand, within CA264_04730at 1094.970 kb on + strand, within CA264_04730at 1095.043 kb on + strand, within CA264_04730at 1095.043 kb on + strand, within CA264_04730at 1095.064 kb on + strand, within CA264_04730at 1095.079 kb on + strand, within CA264_04730at 1095.080 kb on - strand, within CA264_04730at 1095.080 kb on - strand, within CA264_04730at 1095.288 kb on - strand, within CA264_04730at 1095.414 kb on - strandat 1095.414 kb on - strandat 1095.414 kb on - strandat 1095.417 kb on + strandat 1095.512 kb on + strandat 1095.518 kb on + strandat 1095.519 kb on - strandat 1095.521 kb on - strandat 1095.538 kb on + strandat 1095.540 kb on + strandat 1095.540 kb on + strandat 1095.652 kb on + strandat 1095.652 kb on + strandat 1095.653 kb on - strandat 1095.653 kb on - strandat 1095.653 kb on - strandat 1095.655 kb on - strandat 1095.671 kb on + strandat 1095.672 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM
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1,093,366 + -0.6
1,093,367 - -0.8
1,093,369 - +0.2
1,093,401 + -1.0
1,093,402 - -0.2
1,093,403 + -0.8
1,093,403 + -0.4
1,093,408 + +0.1
1,093,430 - -0.3
1,093,433 - -0.9
1,094,202 + +0.5
1,094,219 + +0.3
1,094,286 + -0.0
1,094,286 + -0.3
1,094,286 + +0.0
1,094,290 - -0.6
1,094,290 - +0.0
1,094,292 + -0.0
1,094,292 + -0.1
1,094,303 + -0.0
1,094,315 + +0.2
1,094,316 - -0.1
1,094,387 + CA264_04725 0.22 +0.1
1,094,388 - CA264_04725 0.22 -0.4
1,094,438 + CA264_04725 0.35 +0.3
1,094,527 + CA264_04725 0.58 -0.8
1,094,527 + CA264_04725 0.58 +0.2
1,094,527 + CA264_04725 0.58 -2.2
1,094,527 + CA264_04725 0.58 -2.4
1,094,528 - CA264_04725 0.58 +1.2
1,094,531 + CA264_04725 0.59 +0.6
1,094,532 - CA264_04725 0.59 +0.0
1,094,590 - CA264_04725 0.74 +0.1
1,094,590 - CA264_04725 0.74 -0.5
1,094,639 + CA264_04725 0.87 +0.3
1,094,705 + -0.0
1,094,711 + -0.9
1,094,712 - +1.0
1,094,712 - -0.3
1,094,712 - -1.0
1,094,780 - -0.6
1,094,797 - +0.6
1,094,802 + -0.5
1,094,849 + -0.3
1,094,862 + CA264_04730 0.11 +1.0
1,094,885 + CA264_04730 0.14 -0.7
1,094,886 - CA264_04730 0.15 +0.3
1,094,887 + CA264_04730 0.15 -0.4
1,094,887 + CA264_04730 0.15 +0.5
1,094,888 - CA264_04730 0.15 -2.0
1,094,888 - CA264_04730 0.15 +0.3
1,094,970 + CA264_04730 0.27 -0.5
1,095,043 + CA264_04730 0.38 -0.5
1,095,043 + CA264_04730 0.38 -0.9
1,095,064 + CA264_04730 0.41 +0.7
1,095,079 + CA264_04730 0.44 +0.6
1,095,080 - CA264_04730 0.44 -1.8
1,095,080 - CA264_04730 0.44 +0.3
1,095,288 - CA264_04730 0.75 +0.4
1,095,414 - +0.3
1,095,414 - -0.3
1,095,414 - +0.1
1,095,417 + -0.2
1,095,512 + -1.2
1,095,518 + -0.3
1,095,519 - -0.1
1,095,521 - -0.6
1,095,538 + -0.2
1,095,540 + +1.2
1,095,540 + +0.2
1,095,652 + -1.0
1,095,652 + +0.2
1,095,653 - +0.5
1,095,653 - -1.3
1,095,653 - +0.3
1,095,655 - -0.7
1,095,671 + +1.2
1,095,672 - -1.0

Or see this region's nucleotide sequence