Experiment: m.b. Lomefloxacin 0.002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04555 and CA264_04560 are separated by 134 nucleotides CA264_04560 and CA264_04565 are separated by 8 nucleotides
CA264_04555: CA264_04555 - T9SS C-terminal target domain-containing protein, at 1,051,234 to 1,053,171
_04555
CA264_04560: CA264_04560 - histidine ammonia-lyase, at 1,053,306 to 1,054,796
_04560
CA264_04565: CA264_04565 - histidine--tRNA ligase, at 1,054,805 to 1,056,202
_04565
Position (kb)
1053
1054
1055 Strain fitness (log2 ratio)
-1
0
1
2 at 1052.377 kb on - strand, within CA264_04555 at 1052.457 kb on - strand, within CA264_04555 at 1052.469 kb on + strand, within CA264_04555 at 1052.471 kb on + strand, within CA264_04555 at 1052.471 kb on + strand, within CA264_04555 at 1052.471 kb on + strand, within CA264_04555 at 1052.471 kb on + strand, within CA264_04555 at 1052.472 kb on - strand, within CA264_04555 at 1052.472 kb on - strand, within CA264_04555 at 1052.472 kb on - strand, within CA264_04555 at 1052.594 kb on - strand, within CA264_04555 at 1052.636 kb on + strand, within CA264_04555 at 1052.637 kb on - strand, within CA264_04555 at 1052.660 kb on + strand, within CA264_04555 at 1052.678 kb on + strand, within CA264_04555 at 1052.678 kb on + strand, within CA264_04555 at 1052.678 kb on + strand, within CA264_04555 at 1052.678 kb on + strand, within CA264_04555 at 1052.679 kb on - strand, within CA264_04555 at 1052.679 kb on - strand, within CA264_04555 at 1052.679 kb on - strand, within CA264_04555 at 1052.682 kb on + strand, within CA264_04555 at 1052.743 kb on - strand, within CA264_04555 at 1052.743 kb on - strand, within CA264_04555 at 1052.744 kb on + strand, within CA264_04555 at 1052.744 kb on + strand, within CA264_04555 at 1052.744 kb on + strand, within CA264_04555 at 1052.744 kb on + strand, within CA264_04555 at 1052.744 kb on + strand, within CA264_04555 at 1052.744 kb on + strand, within CA264_04555 at 1052.744 kb on + strand, within CA264_04555 at 1052.745 kb on - strand, within CA264_04555 at 1052.745 kb on - strand, within CA264_04555 at 1052.745 kb on - strand, within CA264_04555 at 1052.748 kb on + strand, within CA264_04555 at 1052.749 kb on - strand, within CA264_04555 at 1052.749 kb on - strand, within CA264_04555 at 1052.749 kb on - strand, within CA264_04555 at 1052.753 kb on + strand, within CA264_04555 at 1052.753 kb on + strand, within CA264_04555 at 1052.754 kb on - strand, within CA264_04555 at 1052.834 kb on - strand, within CA264_04555 at 1052.841 kb on - strand, within CA264_04555 at 1052.901 kb on + strand, within CA264_04555 at 1052.901 kb on + strand, within CA264_04555 at 1052.902 kb on - strand, within CA264_04555 at 1052.903 kb on + strand, within CA264_04555 at 1052.903 kb on + strand, within CA264_04555 at 1052.904 kb on - strand, within CA264_04555 at 1052.904 kb on - strand, within CA264_04555 at 1052.999 kb on + strand at 1052.999 kb on + strand at 1053.030 kb on + strand at 1053.031 kb on - strand at 1053.031 kb on - strand at 1053.070 kb on + strand at 1053.139 kb on - strand at 1053.139 kb on - strand at 1053.165 kb on - strand at 1053.165 kb on - strand at 1053.201 kb on + strand at 1053.214 kb on + strand at 1053.230 kb on + strand at 1053.231 kb on - strand at 1053.280 kb on + strand at 1053.283 kb on - strand at 1053.291 kb on + strand at 1053.291 kb on + strand at 1053.301 kb on + strand at 1053.307 kb on + strand at 1053.376 kb on - strand at 1053.406 kb on - strand at 1053.481 kb on - strand, within CA264_04560 at 1053.549 kb on + strand, within CA264_04560 at 1053.549 kb on + strand, within CA264_04560 at 1053.549 kb on + strand, within CA264_04560 at 1053.550 kb on - strand, within CA264_04560 at 1053.550 kb on - strand, within CA264_04560 at 1053.582 kb on - strand, within CA264_04560 at 1053.588 kb on + strand, within CA264_04560 at 1053.644 kb on - strand, within CA264_04560 at 1053.656 kb on + strand, within CA264_04560 at 1053.656 kb on + strand, within CA264_04560 at 1053.656 kb on + strand, within CA264_04560 at 1053.657 kb on - strand, within CA264_04560 at 1053.657 kb on - strand, within CA264_04560 at 1053.657 kb on - strand, within CA264_04560 at 1053.658 kb on + strand, within CA264_04560 at 1053.658 kb on + strand, within CA264_04560 at 1053.746 kb on + strand, within CA264_04560 at 1053.934 kb on - strand, within CA264_04560 at 1053.969 kb on + strand, within CA264_04560 at 1053.970 kb on - strand, within CA264_04560 at 1054.169 kb on + strand, within CA264_04560 at 1054.169 kb on + strand, within CA264_04560 at 1054.169 kb on + strand, within CA264_04560 at 1054.169 kb on + strand, within CA264_04560 at 1054.190 kb on + strand, within CA264_04560 at 1054.298 kb on - strand, within CA264_04560 at 1054.332 kb on + strand, within CA264_04560 at 1054.333 kb on - strand, within CA264_04560 at 1054.477 kb on - strand, within CA264_04560 at 1054.494 kb on - strand, within CA264_04560 at 1054.500 kb on + strand, within CA264_04560 at 1054.556 kb on + strand, within CA264_04560 at 1054.723 kb on + strand at 1054.778 kb on + strand at 1054.780 kb on + strand at 1054.780 kb on + strand at 1054.780 kb on + strand at 1054.781 kb on - strand at 1054.785 kb on + strand at 1054.807 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM remove 1,052,377 - CA264_04555 0.59 +0.0 1,052,457 - CA264_04555 0.63 +0.3 1,052,469 + CA264_04555 0.64 -0.2 1,052,471 + CA264_04555 0.64 -1.1 1,052,471 + CA264_04555 0.64 +0.2 1,052,471 + CA264_04555 0.64 -1.1 1,052,471 + CA264_04555 0.64 -0.7 1,052,472 - CA264_04555 0.64 -0.1 1,052,472 - CA264_04555 0.64 +1.5 1,052,472 - CA264_04555 0.64 -0.4 1,052,594 - CA264_04555 0.70 -0.6 1,052,636 + CA264_04555 0.72 +0.8 1,052,637 - CA264_04555 0.72 -0.8 1,052,660 + CA264_04555 0.74 -0.1 1,052,678 + CA264_04555 0.75 -0.3 1,052,678 + CA264_04555 0.75 -1.2 1,052,678 + CA264_04555 0.75 -1.0 1,052,678 + CA264_04555 0.75 +0.8 1,052,679 - CA264_04555 0.75 +0.0 1,052,679 - CA264_04555 0.75 +0.7 1,052,679 - CA264_04555 0.75 -0.2 1,052,682 + CA264_04555 0.75 +1.1 1,052,743 - CA264_04555 0.78 -0.4 1,052,743 - CA264_04555 0.78 +0.8 1,052,744 + CA264_04555 0.78 +0.4 1,052,744 + CA264_04555 0.78 +0.6 1,052,744 + CA264_04555 0.78 +0.0 1,052,744 + CA264_04555 0.78 -0.8 1,052,744 + CA264_04555 0.78 +0.2 1,052,744 + CA264_04555 0.78 -0.2 1,052,744 + CA264_04555 0.78 -0.0 1,052,745 - CA264_04555 0.78 -0.8 1,052,745 - CA264_04555 0.78 +0.8 1,052,745 - CA264_04555 0.78 +0.2 1,052,748 + CA264_04555 0.78 +0.1 1,052,749 - CA264_04555 0.78 +1.8 1,052,749 - CA264_04555 0.78 -0.5 1,052,749 - CA264_04555 0.78 -0.6 1,052,753 + CA264_04555 0.78 -0.1 1,052,753 + CA264_04555 0.78 +1.4 1,052,754 - CA264_04555 0.78 +0.2 1,052,834 - CA264_04555 0.83 -0.2 1,052,841 - CA264_04555 0.83 -0.6 1,052,901 + CA264_04555 0.86 +0.6 1,052,901 + CA264_04555 0.86 -0.5 1,052,902 - CA264_04555 0.86 -0.3 1,052,903 + CA264_04555 0.86 +1.0 1,052,903 + CA264_04555 0.86 +1.1 1,052,904 - CA264_04555 0.86 -1.2 1,052,904 - CA264_04555 0.86 -0.6 1,052,999 + -0.4 1,052,999 + +0.2 1,053,030 + +0.5 1,053,031 - +0.1 1,053,031 - -0.3 1,053,070 + +0.4 1,053,139 - -0.5 1,053,139 - +0.3 1,053,165 - +0.5 1,053,165 - -0.9 1,053,201 + +0.0 1,053,214 + -0.0 1,053,230 + +0.5 1,053,231 - -0.1 1,053,280 + -0.5 1,053,283 - -0.6 1,053,291 + +0.7 1,053,291 + +0.2 1,053,301 + -0.0 1,053,307 + +0.1 1,053,376 - +1.7 1,053,406 - +0.6 1,053,481 - CA264_04560 0.12 +1.4 1,053,549 + CA264_04560 0.16 +0.0 1,053,549 + CA264_04560 0.16 +0.1 1,053,549 + CA264_04560 0.16 -0.2 1,053,550 - CA264_04560 0.16 -0.3 1,053,550 - CA264_04560 0.16 -0.0 1,053,582 - CA264_04560 0.19 +0.1 1,053,588 + CA264_04560 0.19 +0.3 1,053,644 - CA264_04560 0.23 -1.2 1,053,656 + CA264_04560 0.23 +1.1 1,053,656 + CA264_04560 0.23 +0.2 1,053,656 + CA264_04560 0.23 +1.6 1,053,657 - CA264_04560 0.24 +0.2 1,053,657 - CA264_04560 0.24 +0.2 1,053,657 - CA264_04560 0.24 -0.2 1,053,658 + CA264_04560 0.24 +0.1 1,053,658 + CA264_04560 0.24 +1.8 1,053,746 + CA264_04560 0.30 -0.3 1,053,934 - CA264_04560 0.42 +0.7 1,053,969 + CA264_04560 0.44 +1.1 1,053,970 - CA264_04560 0.45 -0.4 1,054,169 + CA264_04560 0.58 -0.1 1,054,169 + CA264_04560 0.58 +1.8 1,054,169 + CA264_04560 0.58 +0.7 1,054,169 + CA264_04560 0.58 +0.2 1,054,190 + CA264_04560 0.59 -0.3 1,054,298 - CA264_04560 0.67 +0.7 1,054,332 + CA264_04560 0.69 -0.4 1,054,333 - CA264_04560 0.69 +0.2 1,054,477 - CA264_04560 0.79 +0.1 1,054,494 - CA264_04560 0.80 +0.6 1,054,500 + CA264_04560 0.80 -0.4 1,054,556 + CA264_04560 0.84 -0.0 1,054,723 + -0.4 1,054,778 + +2.1 1,054,780 + +0.4 1,054,780 + +0.6 1,054,780 + -0.3 1,054,781 - -0.1 1,054,785 + +0.5 1,054,807 - -0.5
Or see this region's nucleotide sequence