Experiment: m.b. Lomefloxacin 0.002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03650 and CA264_03655 are separated by 25 nucleotides CA264_03655 and CA264_03660 are separated by 97 nucleotides
CA264_03650: CA264_03650 - MexE family multidrug efflux RND transporter periplasmic adaptor subunit, at 850,970 to 852,118
_03650
CA264_03655: CA264_03655 - multidrug efflux RND transporter permease subunit, at 852,144 to 855,338
_03655
CA264_03660: CA264_03660 - hypothetical protein, at 855,436 to 855,912
_03660
Position (kb) 852
853
854
855
856 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 851.207 kb on + strand, within CA264_03650 at 851.271 kb on - strand, within CA264_03650 at 851.397 kb on + strand, within CA264_03650 at 851.398 kb on - strand, within CA264_03650 at 851.398 kb on - strand, within CA264_03650 at 851.402 kb on + strand, within CA264_03650 at 851.402 kb on + strand, within CA264_03650 at 851.621 kb on - strand, within CA264_03650 at 851.647 kb on - strand, within CA264_03650 at 851.712 kb on - strand, within CA264_03650 at 851.773 kb on + strand, within CA264_03650 at 851.774 kb on - strand, within CA264_03650 at 851.912 kb on + strand, within CA264_03650 at 851.912 kb on + strand, within CA264_03650 at 851.912 kb on + strand, within CA264_03650 at 851.912 kb on + strand, within CA264_03650 at 851.912 kb on + strand, within CA264_03650 at 851.913 kb on - strand, within CA264_03650 at 851.913 kb on - strand, within CA264_03650 at 851.913 kb on - strand, within CA264_03650 at 851.913 kb on - strand, within CA264_03650 at 851.913 kb on - strand, within CA264_03650 at 851.918 kb on + strand, within CA264_03650 at 851.918 kb on + strand, within CA264_03650 at 851.918 kb on + strand, within CA264_03650 at 851.919 kb on - strand, within CA264_03650 at 851.919 kb on - strand, within CA264_03650 at 851.919 kb on - strand, within CA264_03650 at 851.919 kb on - strand, within CA264_03650 at 851.919 kb on - strand, within CA264_03650 at 851.922 kb on + strand, within CA264_03650 at 851.922 kb on + strand, within CA264_03650 at 852.025 kb on - strand at 852.035 kb on - strand at 852.157 kb on + strand at 852.161 kb on + strand at 852.163 kb on + strand at 852.182 kb on + strand at 852.184 kb on + strand at 852.194 kb on + strand at 852.195 kb on - strand at 852.195 kb on - strand at 852.196 kb on + strand at 852.196 kb on + strand at 852.196 kb on + strand at 852.196 kb on + strand at 852.225 kb on - strand at 852.257 kb on + strand at 852.291 kb on + strand at 852.292 kb on - strand at 852.292 kb on - strand at 852.294 kb on - strand at 852.375 kb on + strand at 852.375 kb on + strand at 852.376 kb on - strand at 852.376 kb on - strand at 852.380 kb on + strand at 852.380 kb on + strand at 852.386 kb on + strand at 852.387 kb on - strand at 852.511 kb on + strand, within CA264_03655 at 852.616 kb on - strand, within CA264_03655 at 852.616 kb on - strand, within CA264_03655 at 852.627 kb on + strand, within CA264_03655 at 852.627 kb on + strand, within CA264_03655 at 852.627 kb on + strand, within CA264_03655 at 852.628 kb on - strand, within CA264_03655 at 852.628 kb on - strand, within CA264_03655 at 852.628 kb on - strand, within CA264_03655 at 852.719 kb on + strand, within CA264_03655 at 852.733 kb on - strand, within CA264_03655 at 852.756 kb on - strand, within CA264_03655 at 852.756 kb on - strand, within CA264_03655 at 852.894 kb on - strand, within CA264_03655 at 852.930 kb on + strand, within CA264_03655 at 852.930 kb on + strand, within CA264_03655 at 852.972 kb on + strand, within CA264_03655 at 853.064 kb on + strand, within CA264_03655 at 853.068 kb on + strand, within CA264_03655 at 853.068 kb on + strand, within CA264_03655 at 853.289 kb on + strand, within CA264_03655 at 853.314 kb on - strand, within CA264_03655 at 853.404 kb on + strand, within CA264_03655 at 853.405 kb on - strand, within CA264_03655 at 853.405 kb on - strand, within CA264_03655 at 853.405 kb on - strand, within CA264_03655 at 853.460 kb on + strand, within CA264_03655 at 853.586 kb on + strand, within CA264_03655 at 853.586 kb on + strand, within CA264_03655 at 853.586 kb on + strand, within CA264_03655 at 853.586 kb on + strand, within CA264_03655 at 853.586 kb on + strand, within CA264_03655 at 853.607 kb on + strand, within CA264_03655 at 853.613 kb on - strand, within CA264_03655 at 853.692 kb on - strand, within CA264_03655 at 853.736 kb on - strand, within CA264_03655 at 853.791 kb on - strand, within CA264_03655 at 853.791 kb on - strand, within CA264_03655 at 853.791 kb on - strand, within CA264_03655 at 853.794 kb on + strand, within CA264_03655 at 853.794 kb on + strand, within CA264_03655 at 853.795 kb on - strand, within CA264_03655 at 853.795 kb on - strand, within CA264_03655 at 853.795 kb on - strand, within CA264_03655 at 853.795 kb on - strand, within CA264_03655 at 853.812 kb on - strand at 853.839 kb on - strand, within CA264_03655 at 853.841 kb on - strand, within CA264_03655 at 853.844 kb on + strand, within CA264_03655 at 853.919 kb on - strand, within CA264_03655 at 853.947 kb on - strand, within CA264_03655 at 853.976 kb on + strand, within CA264_03655 at 853.998 kb on - strand, within CA264_03655 at 854.028 kb on + strand, within CA264_03655 at 854.028 kb on + strand, within CA264_03655 at 854.029 kb on - strand, within CA264_03655 at 854.097 kb on - strand, within CA264_03655 at 854.137 kb on + strand, within CA264_03655 at 854.295 kb on + strand, within CA264_03655 at 854.298 kb on - strand, within CA264_03655 at 854.339 kb on - strand, within CA264_03655 at 854.381 kb on + strand, within CA264_03655 at 854.382 kb on - strand, within CA264_03655 at 854.385 kb on + strand, within CA264_03655 at 854.385 kb on + strand, within CA264_03655 at 854.390 kb on + strand, within CA264_03655 at 854.391 kb on - strand, within CA264_03655 at 854.403 kb on + strand, within CA264_03655 at 854.403 kb on + strand, within CA264_03655 at 854.403 kb on + strand, within CA264_03655 at 854.404 kb on - strand, within CA264_03655 at 854.404 kb on - strand, within CA264_03655 at 854.461 kb on + strand, within CA264_03655 at 854.474 kb on + strand, within CA264_03655 at 854.474 kb on + strand, within CA264_03655 at 854.475 kb on - strand, within CA264_03655 at 854.475 kb on - strand, within CA264_03655 at 854.481 kb on + strand, within CA264_03655 at 854.481 kb on + strand, within CA264_03655 at 854.512 kb on - strand, within CA264_03655 at 854.512 kb on - strand, within CA264_03655 at 854.514 kb on + strand, within CA264_03655 at 854.514 kb on + strand, within CA264_03655 at 854.514 kb on + strand, within CA264_03655 at 854.514 kb on + strand, within CA264_03655 at 854.515 kb on - strand, within CA264_03655 at 854.515 kb on - strand, within CA264_03655 at 854.634 kb on - strand, within CA264_03655 at 854.649 kb on + strand, within CA264_03655 at 854.649 kb on + strand, within CA264_03655 at 854.650 kb on - strand, within CA264_03655 at 854.698 kb on + strand, within CA264_03655 at 854.698 kb on + strand, within CA264_03655 at 854.793 kb on - strand, within CA264_03655 at 854.794 kb on + strand, within CA264_03655 at 854.795 kb on - strand, within CA264_03655 at 854.795 kb on - strand, within CA264_03655 at 854.795 kb on - strand, within CA264_03655 at 854.800 kb on + strand, within CA264_03655 at 854.800 kb on + strand, within CA264_03655 at 854.800 kb on + strand, within CA264_03655 at 854.801 kb on - strand, within CA264_03655 at 854.801 kb on - strand, within CA264_03655 at 854.801 kb on - strand, within CA264_03655 at 854.801 kb on - strand, within CA264_03655 at 854.823 kb on + strand, within CA264_03655 at 854.824 kb on - strand, within CA264_03655 at 854.905 kb on + strand, within CA264_03655 at 854.906 kb on - strand, within CA264_03655 at 854.909 kb on + strand, within CA264_03655 at 854.942 kb on + strand, within CA264_03655 at 855.097 kb on + strand at 855.097 kb on + strand at 855.097 kb on + strand at 855.097 kb on + strand at 855.097 kb on + strand at 855.097 kb on + strand at 855.098 kb on - strand at 855.169 kb on + strand at 855.170 kb on - strand at 855.170 kb on - strand at 855.225 kb on + strand at 855.226 kb on - strand at 855.226 kb on - strand at 855.324 kb on + strand at 855.325 kb on - strand at 855.337 kb on - strand at 855.341 kb on - strand at 855.341 kb on - strand at 855.427 kb on + strand at 855.504 kb on + strand, within CA264_03660 at 855.743 kb on - strand, within CA264_03660 at 855.824 kb on - strand, within CA264_03660 at 855.863 kb on - strand, within CA264_03660 at 855.863 kb on - strand, within CA264_03660 at 855.869 kb on + strand at 855.870 kb on - strand at 855.917 kb on + strand at 855.918 kb on - strand at 855.953 kb on + strand at 855.954 kb on - strand at 855.958 kb on + strand at 855.978 kb on - strand at 855.982 kb on + strand at 855.996 kb on + strand at 856.190 kb on + strand at 856.192 kb on + strand at 856.196 kb on + strand at 856.196 kb on + strand at 856.197 kb on - strand at 856.225 kb on - strand at 856.309 kb on - strand at 856.311 kb on + strand at 856.330 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.002 mM remove 851,207 + CA264_03650 0.21 -1.1 851,271 - CA264_03650 0.26 -1.8 851,397 + CA264_03650 0.37 -0.7 851,398 - CA264_03650 0.37 -1.4 851,398 - CA264_03650 0.37 -0.4 851,402 + CA264_03650 0.38 -0.5 851,402 + CA264_03650 0.38 -0.8 851,621 - CA264_03650 0.57 +0.3 851,647 - CA264_03650 0.59 -1.1 851,712 - CA264_03650 0.65 -1.8 851,773 + CA264_03650 0.70 -1.9 851,774 - CA264_03650 0.70 -1.0 851,912 + CA264_03650 0.82 -2.1 851,912 + CA264_03650 0.82 -1.4 851,912 + CA264_03650 0.82 -2.1 851,912 + CA264_03650 0.82 -0.2 851,912 + CA264_03650 0.82 -1.2 851,913 - CA264_03650 0.82 -0.7 851,913 - CA264_03650 0.82 -1.9 851,913 - CA264_03650 0.82 -0.7 851,913 - CA264_03650 0.82 -1.2 851,913 - CA264_03650 0.82 -0.9 851,918 + CA264_03650 0.83 -1.1 851,918 + CA264_03650 0.83 -0.9 851,918 + CA264_03650 0.83 -0.1 851,919 - CA264_03650 0.83 -1.5 851,919 - CA264_03650 0.83 -1.0 851,919 - CA264_03650 0.83 +0.9 851,919 - CA264_03650 0.83 +0.5 851,919 - CA264_03650 0.83 -1.1 851,922 + CA264_03650 0.83 -2.1 851,922 + CA264_03650 0.83 -2.9 852,025 - -0.4 852,035 - -0.4 852,157 + -1.5 852,161 + -1.7 852,163 + +0.1 852,182 + -0.5 852,184 + -0.8 852,194 + -1.9 852,195 - -1.6 852,195 - +0.6 852,196 + -1.2 852,196 + -1.2 852,196 + -2.2 852,196 + -0.6 852,225 - +0.3 852,257 + -1.3 852,291 + +0.5 852,292 - -0.1 852,292 - -3.5 852,294 - -1.5 852,375 + -1.8 852,375 + -1.2 852,376 - +0.0 852,376 - -0.4 852,380 + -2.1 852,380 + +0.5 852,386 + -1.6 852,387 - -2.6 852,511 + CA264_03655 0.11 -0.4 852,616 - CA264_03655 0.15 -0.4 852,616 - CA264_03655 0.15 -1.1 852,627 + CA264_03655 0.15 -0.1 852,627 + CA264_03655 0.15 -0.1 852,627 + CA264_03655 0.15 -0.8 852,628 - CA264_03655 0.15 -2.0 852,628 - CA264_03655 0.15 -1.7 852,628 - CA264_03655 0.15 -1.8 852,719 + CA264_03655 0.18 -0.1 852,733 - CA264_03655 0.18 -1.2 852,756 - CA264_03655 0.19 -1.9 852,756 - CA264_03655 0.19 -0.8 852,894 - CA264_03655 0.23 +0.5 852,930 + CA264_03655 0.25 -1.3 852,930 + CA264_03655 0.25 -1.0 852,972 + CA264_03655 0.26 -1.0 853,064 + CA264_03655 0.29 -1.1 853,068 + CA264_03655 0.29 +0.5 853,068 + CA264_03655 0.29 -0.8 853,289 + CA264_03655 0.36 -0.9 853,314 - CA264_03655 0.37 -1.0 853,404 + CA264_03655 0.39 -0.2 853,405 - CA264_03655 0.39 -1.5 853,405 - CA264_03655 0.39 -0.9 853,405 - CA264_03655 0.39 -1.9 853,460 + CA264_03655 0.41 -1.2 853,586 + CA264_03655 0.45 -0.1 853,586 + CA264_03655 0.45 -1.9 853,586 + CA264_03655 0.45 -0.7 853,586 + CA264_03655 0.45 -0.9 853,586 + CA264_03655 0.45 -1.3 853,607 + CA264_03655 0.46 +0.1 853,613 - CA264_03655 0.46 -1.4 853,692 - CA264_03655 0.48 -0.4 853,736 - CA264_03655 0.50 -0.7 853,791 - CA264_03655 0.52 -1.3 853,791 - CA264_03655 0.52 -1.2 853,791 - CA264_03655 0.52 -1.8 853,794 + CA264_03655 0.52 -1.6 853,794 + CA264_03655 0.52 +0.1 853,795 - CA264_03655 0.52 -1.8 853,795 - CA264_03655 0.52 -1.9 853,795 - CA264_03655 0.52 -1.7 853,795 - CA264_03655 0.52 -1.7 853,812 - +1.9 853,839 - CA264_03655 0.53 -1.2 853,841 - CA264_03655 0.53 -1.2 853,844 + CA264_03655 0.53 -1.2 853,919 - CA264_03655 0.56 -1.7 853,947 - CA264_03655 0.56 -2.0 853,976 + CA264_03655 0.57 -0.8 853,998 - CA264_03655 0.58 -1.9 854,028 + CA264_03655 0.59 -2.8 854,028 + CA264_03655 0.59 -0.5 854,029 - CA264_03655 0.59 -0.5 854,097 - CA264_03655 0.61 -1.4 854,137 + CA264_03655 0.62 -1.8 854,295 + CA264_03655 0.67 -0.6 854,298 - CA264_03655 0.67 -0.9 854,339 - CA264_03655 0.69 -1.6 854,381 + CA264_03655 0.70 +0.4 854,382 - CA264_03655 0.70 -0.8 854,385 + CA264_03655 0.70 +2.9 854,385 + CA264_03655 0.70 -1.1 854,390 + CA264_03655 0.70 -1.6 854,391 - CA264_03655 0.70 -1.0 854,403 + CA264_03655 0.71 +0.1 854,403 + CA264_03655 0.71 -1.0 854,403 + CA264_03655 0.71 -2.0 854,404 - CA264_03655 0.71 -0.8 854,404 - CA264_03655 0.71 -0.4 854,461 + CA264_03655 0.73 -1.0 854,474 + CA264_03655 0.73 -2.0 854,474 + CA264_03655 0.73 -1.0 854,475 - CA264_03655 0.73 -0.6 854,475 - CA264_03655 0.73 -1.6 854,481 + CA264_03655 0.73 -2.3 854,481 + CA264_03655 0.73 -3.1 854,512 - CA264_03655 0.74 -0.2 854,512 - CA264_03655 0.74 -1.1 854,514 + CA264_03655 0.74 -1.3 854,514 + CA264_03655 0.74 -0.4 854,514 + CA264_03655 0.74 -1.3 854,514 + CA264_03655 0.74 -0.5 854,515 - CA264_03655 0.74 +0.1 854,515 - CA264_03655 0.74 -0.3 854,634 - CA264_03655 0.78 -0.4 854,649 + CA264_03655 0.78 +0.3 854,649 + CA264_03655 0.78 +0.5 854,650 - CA264_03655 0.78 -2.9 854,698 + CA264_03655 0.80 -1.4 854,698 + CA264_03655 0.80 -2.8 854,793 - CA264_03655 0.83 -2.1 854,794 + CA264_03655 0.83 -1.6 854,795 - CA264_03655 0.83 -2.4 854,795 - CA264_03655 0.83 -1.7 854,795 - CA264_03655 0.83 -1.1 854,800 + CA264_03655 0.83 -1.2 854,800 + CA264_03655 0.83 -0.9 854,800 + CA264_03655 0.83 -0.2 854,801 - CA264_03655 0.83 -2.4 854,801 - CA264_03655 0.83 -1.3 854,801 - CA264_03655 0.83 -0.6 854,801 - CA264_03655 0.83 -1.8 854,823 + CA264_03655 0.84 -1.2 854,824 - CA264_03655 0.84 -0.5 854,905 + CA264_03655 0.86 +1.2 854,906 - CA264_03655 0.86 -1.6 854,909 + CA264_03655 0.87 -0.5 854,942 + CA264_03655 0.88 -0.5 855,097 + -0.8 855,097 + -1.6 855,097 + -0.4 855,097 + -2.1 855,097 + -1.0 855,097 + -0.9 855,098 - +0.2 855,169 + -1.5 855,170 - -1.5 855,170 - -1.8 855,225 + -1.4 855,226 - -1.9 855,226 - -0.5 855,324 + -1.5 855,325 - -1.4 855,337 - -0.6 855,341 - -1.4 855,341 - -1.0 855,427 + -1.5 855,504 + CA264_03660 0.14 -0.7 855,743 - CA264_03660 0.64 -1.0 855,824 - CA264_03660 0.81 -0.6 855,863 - CA264_03660 0.90 -0.8 855,863 - CA264_03660 0.90 -1.0 855,869 + -0.6 855,870 - -0.6 855,917 + -0.1 855,918 - -0.3 855,953 + +1.3 855,954 - -0.7 855,958 + -0.7 855,978 - -0.6 855,982 + +0.8 855,996 + +0.0 856,190 + -0.4 856,192 + -0.4 856,196 + +0.2 856,196 + -0.8 856,197 - -0.3 856,225 - +0.6 856,309 - +1.8 856,311 + +0.9 856,330 - +0.4
Or see this region's nucleotide sequence