Experiment: Casamino Acids (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3511 and Echvi_3512 are separated by 97 nucleotides Echvi_3512 and Echvi_3513 are separated by 33 nucleotides Echvi_3513 and Echvi_3514 are separated by 216 nucleotides
Echvi_3511: Echvi_3511 - hypothetical protein, at 4,161,551 to 4,162,408
_3511
Echvi_3512: Echvi_3512 - DNA binding domain, excisionase family, at 4,162,506 to 4,162,784
_3512
Echvi_3513: Echvi_3513 - Predicted P-loop ATPase and inactivated derivatives, at 4,162,818 to 4,164,032
_3513
Echvi_3514: Echvi_3514 - DNA primase (bacterial type), at 4,164,249 to 4,165,112
_3514
Position (kb) 4162
4163
4164
4165 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4161.887 kb on - strand, within Echvi_3511 at 4161.887 kb on - strand, within Echvi_3511 at 4161.887 kb on - strand, within Echvi_3511 at 4161.888 kb on + strand, within Echvi_3511 at 4161.888 kb on + strand, within Echvi_3511 at 4161.888 kb on + strand, within Echvi_3511 at 4161.888 kb on + strand, within Echvi_3511 at 4161.889 kb on - strand, within Echvi_3511 at 4161.889 kb on - strand, within Echvi_3511 at 4161.889 kb on - strand, within Echvi_3511 at 4161.889 kb on - strand, within Echvi_3511 at 4161.889 kb on - strand, within Echvi_3511 at 4161.919 kb on + strand, within Echvi_3511 at 4162.009 kb on + strand, within Echvi_3511 at 4162.094 kb on + strand, within Echvi_3511 at 4162.181 kb on - strand, within Echvi_3511 at 4162.181 kb on - strand, within Echvi_3511 at 4162.212 kb on - strand, within Echvi_3511 at 4162.235 kb on + strand, within Echvi_3511 at 4162.235 kb on + strand, within Echvi_3511 at 4162.235 kb on + strand, within Echvi_3511 at 4162.236 kb on - strand, within Echvi_3511 at 4162.236 kb on - strand, within Echvi_3511 at 4162.236 kb on - strand, within Echvi_3511 at 4162.236 kb on - strand, within Echvi_3511 at 4162.236 kb on - strand, within Echvi_3511 at 4162.236 kb on - strand, within Echvi_3511 at 4162.243 kb on + strand, within Echvi_3511 at 4162.244 kb on - strand, within Echvi_3511 at 4162.313 kb on + strand, within Echvi_3511 at 4162.333 kb on + strand at 4162.333 kb on + strand at 4162.334 kb on - strand at 4162.334 kb on - strand at 4162.340 kb on + strand at 4162.358 kb on + strand at 4162.359 kb on - strand at 4162.359 kb on - strand at 4162.361 kb on - strand at 4162.401 kb on + strand at 4162.401 kb on + strand at 4162.401 kb on + strand at 4162.402 kb on - strand at 4162.402 kb on - strand at 4162.402 kb on - strand at 4162.467 kb on + strand at 4162.520 kb on + strand at 4162.553 kb on + strand, within Echvi_3512 at 4162.582 kb on + strand, within Echvi_3512 at 4162.600 kb on - strand, within Echvi_3512 at 4162.730 kb on + strand, within Echvi_3512 at 4162.873 kb on + strand at 4162.874 kb on - strand at 4162.874 kb on - strand at 4162.877 kb on + strand at 4162.878 kb on - strand at 4162.878 kb on - strand at 4162.878 kb on - strand at 4162.917 kb on - strand at 4162.917 kb on - strand at 4162.986 kb on - strand, within Echvi_3513 at 4162.992 kb on + strand, within Echvi_3513 at 4162.992 kb on + strand, within Echvi_3513 at 4162.992 kb on + strand, within Echvi_3513 at 4162.993 kb on - strand, within Echvi_3513 at 4162.993 kb on - strand, within Echvi_3513 at 4162.996 kb on + strand, within Echvi_3513 at 4162.996 kb on + strand, within Echvi_3513 at 4162.996 kb on + strand, within Echvi_3513 at 4162.996 kb on + strand, within Echvi_3513 at 4162.997 kb on - strand, within Echvi_3513 at 4162.997 kb on - strand, within Echvi_3513 at 4162.997 kb on - strand, within Echvi_3513 at 4162.997 kb on - strand, within Echvi_3513 at 4162.997 kb on - strand, within Echvi_3513 at 4162.997 kb on - strand, within Echvi_3513 at 4163.038 kb on + strand, within Echvi_3513 at 4163.039 kb on - strand, within Echvi_3513 at 4163.061 kb on + strand, within Echvi_3513 at 4163.061 kb on + strand, within Echvi_3513 at 4163.062 kb on - strand, within Echvi_3513 at 4163.062 kb on - strand, within Echvi_3513 at 4163.064 kb on - strand, within Echvi_3513 at 4163.091 kb on + strand, within Echvi_3513 at 4163.092 kb on - strand, within Echvi_3513 at 4163.092 kb on - strand, within Echvi_3513 at 4163.113 kb on + strand, within Echvi_3513 at 4163.139 kb on + strand, within Echvi_3513 at 4163.139 kb on + strand, within Echvi_3513 at 4163.139 kb on + strand, within Echvi_3513 at 4163.140 kb on - strand, within Echvi_3513 at 4163.141 kb on + strand, within Echvi_3513 at 4163.141 kb on + strand, within Echvi_3513 at 4163.142 kb on - strand, within Echvi_3513 at 4163.160 kb on + strand, within Echvi_3513 at 4163.160 kb on + strand, within Echvi_3513 at 4163.160 kb on + strand, within Echvi_3513 at 4163.160 kb on + strand, within Echvi_3513 at 4163.160 kb on + strand, within Echvi_3513 at 4163.160 kb on + strand, within Echvi_3513 at 4163.161 kb on - strand, within Echvi_3513 at 4163.161 kb on - strand, within Echvi_3513 at 4163.161 kb on - strand, within Echvi_3513 at 4163.161 kb on - strand, within Echvi_3513 at 4163.163 kb on - strand, within Echvi_3513 at 4163.190 kb on - strand, within Echvi_3513 at 4163.195 kb on - strand, within Echvi_3513 at 4163.195 kb on - strand, within Echvi_3513 at 4163.195 kb on - strand, within Echvi_3513 at 4163.234 kb on + strand, within Echvi_3513 at 4163.234 kb on + strand, within Echvi_3513 at 4163.234 kb on + strand, within Echvi_3513 at 4163.235 kb on - strand, within Echvi_3513 at 4163.236 kb on + strand, within Echvi_3513 at 4163.237 kb on - strand, within Echvi_3513 at 4163.237 kb on - strand, within Echvi_3513 at 4163.247 kb on + strand, within Echvi_3513 at 4163.248 kb on - strand, within Echvi_3513 at 4163.250 kb on + strand, within Echvi_3513 at 4163.251 kb on - strand, within Echvi_3513 at 4163.251 kb on - strand, within Echvi_3513 at 4163.343 kb on + strand, within Echvi_3513 at 4163.343 kb on + strand, within Echvi_3513 at 4163.344 kb on - strand, within Echvi_3513 at 4163.346 kb on + strand, within Echvi_3513 at 4163.346 kb on + strand, within Echvi_3513 at 4163.346 kb on + strand, within Echvi_3513 at 4163.347 kb on - strand, within Echvi_3513 at 4163.358 kb on - strand, within Echvi_3513 at 4163.500 kb on - strand, within Echvi_3513 at 4163.549 kb on + strand, within Echvi_3513 at 4163.633 kb on + strand, within Echvi_3513 at 4163.634 kb on - strand, within Echvi_3513 at 4163.654 kb on + strand, within Echvi_3513 at 4163.655 kb on - strand, within Echvi_3513 at 4163.674 kb on - strand, within Echvi_3513 at 4163.762 kb on + strand, within Echvi_3513 at 4163.790 kb on + strand, within Echvi_3513 at 4163.795 kb on + strand, within Echvi_3513 at 4163.842 kb on + strand, within Echvi_3513 at 4163.842 kb on + strand, within Echvi_3513 at 4163.843 kb on - strand, within Echvi_3513 at 4163.888 kb on - strand, within Echvi_3513 at 4163.979 kb on + strand at 4163.979 kb on + strand at 4163.979 kb on + strand at 4163.979 kb on + strand at 4163.980 kb on - strand at 4163.980 kb on - strand at 4163.980 kb on - strand at 4163.980 kb on - strand at 4163.980 kb on - strand at 4164.012 kb on + strand at 4164.012 kb on + strand at 4164.021 kb on + strand at 4164.036 kb on + strand at 4164.036 kb on + strand at 4164.047 kb on - strand at 4164.052 kb on + strand at 4164.056 kb on - strand at 4164.080 kb on - strand at 4164.089 kb on + strand at 4164.113 kb on + strand at 4164.114 kb on - strand at 4164.137 kb on + strand at 4164.137 kb on + strand at 4164.137 kb on + strand at 4164.137 kb on + strand at 4164.137 kb on + strand at 4164.191 kb on + strand at 4164.192 kb on - strand at 4164.194 kb on + strand at 4164.194 kb on + strand at 4164.195 kb on - strand at 4164.195 kb on - strand at 4164.195 kb on - strand at 4164.195 kb on - strand at 4164.198 kb on + strand at 4164.198 kb on + strand at 4164.199 kb on - strand at 4164.199 kb on - strand at 4164.199 kb on - strand at 4164.199 kb on - strand at 4164.211 kb on - strand at 4164.236 kb on + strand at 4164.237 kb on - strand at 4164.246 kb on - strand at 4164.246 kb on - strand at 4164.336 kb on + strand, within Echvi_3514 at 4164.336 kb on + strand, within Echvi_3514 at 4164.337 kb on - strand, within Echvi_3514 at 4164.337 kb on - strand, within Echvi_3514 at 4164.368 kb on + strand, within Echvi_3514 at 4164.369 kb on - strand, within Echvi_3514 at 4164.381 kb on - strand, within Echvi_3514 at 4164.403 kb on + strand, within Echvi_3514 at 4164.404 kb on - strand, within Echvi_3514 at 4164.404 kb on - strand, within Echvi_3514 at 4164.404 kb on - strand, within Echvi_3514 at 4164.499 kb on - strand, within Echvi_3514 at 4164.499 kb on - strand, within Echvi_3514 at 4164.510 kb on - strand, within Echvi_3514 at 4164.510 kb on - strand, within Echvi_3514 at 4164.510 kb on - strand, within Echvi_3514 at 4164.574 kb on + strand, within Echvi_3514 at 4164.681 kb on + strand, within Echvi_3514 at 4164.682 kb on - strand, within Echvi_3514 at 4164.684 kb on + strand, within Echvi_3514 at 4164.691 kb on + strand, within Echvi_3514 at 4164.705 kb on + strand, within Echvi_3514 at 4164.757 kb on - strand, within Echvi_3514 at 4164.785 kb on + strand, within Echvi_3514 at 4164.785 kb on + strand, within Echvi_3514 at 4164.786 kb on - strand, within Echvi_3514 at 4164.786 kb on - strand, within Echvi_3514 at 4164.786 kb on - strand, within Echvi_3514 at 4164.789 kb on + strand, within Echvi_3514 at 4164.789 kb on + strand, within Echvi_3514 at 4164.789 kb on + strand, within Echvi_3514 at 4164.790 kb on - strand, within Echvi_3514 at 4164.790 kb on - strand, within Echvi_3514 at 4164.790 kb on - strand, within Echvi_3514 at 4164.790 kb on - strand, within Echvi_3514 at 4164.790 kb on - strand, within Echvi_3514 at 4164.935 kb on + strand, within Echvi_3514 at 4164.935 kb on + strand, within Echvi_3514 at 4164.980 kb on - strand, within Echvi_3514 at 4164.980 kb on - strand, within Echvi_3514
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino Acids (N) remove 4,161,887 - Echvi_3511 0.39 +0.6 4,161,887 - Echvi_3511 0.39 -0.1 4,161,887 - Echvi_3511 0.39 -0.3 4,161,888 + Echvi_3511 0.39 +0.8 4,161,888 + Echvi_3511 0.39 -1.3 4,161,888 + Echvi_3511 0.39 -2.3 4,161,888 + Echvi_3511 0.39 +0.3 4,161,889 - Echvi_3511 0.39 -0.4 4,161,889 - Echvi_3511 0.39 +0.7 4,161,889 - Echvi_3511 0.39 +0.3 4,161,889 - Echvi_3511 0.39 -0.2 4,161,889 - Echvi_3511 0.39 -1.0 4,161,919 + Echvi_3511 0.43 +0.7 4,162,009 + Echvi_3511 0.53 -0.8 4,162,094 + Echvi_3511 0.63 +0.4 4,162,181 - Echvi_3511 0.73 +0.8 4,162,181 - Echvi_3511 0.73 +1.2 4,162,212 - Echvi_3511 0.77 -1.8 4,162,235 + Echvi_3511 0.80 +0.4 4,162,235 + Echvi_3511 0.80 -2.0 4,162,235 + Echvi_3511 0.80 -0.0 4,162,236 - Echvi_3511 0.80 +0.5 4,162,236 - Echvi_3511 0.80 +3.1 4,162,236 - Echvi_3511 0.80 +0.3 4,162,236 - Echvi_3511 0.80 +2.5 4,162,236 - Echvi_3511 0.80 +1.5 4,162,236 - Echvi_3511 0.80 -0.9 4,162,243 + Echvi_3511 0.81 -0.9 4,162,244 - Echvi_3511 0.81 -0.7 4,162,313 + Echvi_3511 0.89 +0.1 4,162,333 + +0.5 4,162,333 + +0.3 4,162,334 - +0.4 4,162,334 - -0.2 4,162,340 + -0.3 4,162,358 + -0.3 4,162,359 - +1.1 4,162,359 - +0.1 4,162,361 - +0.7 4,162,401 + -0.6 4,162,401 + +1.7 4,162,401 + +0.9 4,162,402 - -1.0 4,162,402 - +1.1 4,162,402 - +2.1 4,162,467 + +0.2 4,162,520 + -1.3 4,162,553 + Echvi_3512 0.17 -1.5 4,162,582 + Echvi_3512 0.27 +2.1 4,162,600 - Echvi_3512 0.34 +0.1 4,162,730 + Echvi_3512 0.80 +1.1 4,162,873 + -1.0 4,162,874 - +0.7 4,162,874 - -0.1 4,162,877 + -0.1 4,162,878 - +0.5 4,162,878 - -2.3 4,162,878 - -2.2 4,162,917 - +1.2 4,162,917 - -0.6 4,162,986 - Echvi_3513 0.14 +1.2 4,162,992 + Echvi_3513 0.14 +1.1 4,162,992 + Echvi_3513 0.14 +1.6 4,162,992 + Echvi_3513 0.14 -0.6 4,162,993 - Echvi_3513 0.14 -0.9 4,162,993 - Echvi_3513 0.14 +0.7 4,162,996 + Echvi_3513 0.15 -0.2 4,162,996 + Echvi_3513 0.15 +0.4 4,162,996 + Echvi_3513 0.15 +0.6 4,162,996 + Echvi_3513 0.15 -0.7 4,162,997 - Echvi_3513 0.15 -0.0 4,162,997 - Echvi_3513 0.15 -0.1 4,162,997 - Echvi_3513 0.15 -1.4 4,162,997 - Echvi_3513 0.15 +0.6 4,162,997 - Echvi_3513 0.15 -1.5 4,162,997 - Echvi_3513 0.15 -2.7 4,163,038 + Echvi_3513 0.18 -1.3 4,163,039 - Echvi_3513 0.18 -0.4 4,163,061 + Echvi_3513 0.20 -1.8 4,163,061 + Echvi_3513 0.20 -0.5 4,163,062 - Echvi_3513 0.20 +0.6 4,163,062 - Echvi_3513 0.20 -0.3 4,163,064 - Echvi_3513 0.20 -0.5 4,163,091 + Echvi_3513 0.22 -0.1 4,163,092 - Echvi_3513 0.23 +1.2 4,163,092 - Echvi_3513 0.23 -1.3 4,163,113 + Echvi_3513 0.24 +2.2 4,163,139 + Echvi_3513 0.26 +0.3 4,163,139 + Echvi_3513 0.26 -0.1 4,163,139 + Echvi_3513 0.26 +1.7 4,163,140 - Echvi_3513 0.27 +1.1 4,163,141 + Echvi_3513 0.27 -0.7 4,163,141 + Echvi_3513 0.27 -0.5 4,163,142 - Echvi_3513 0.27 -0.4 4,163,160 + Echvi_3513 0.28 -1.5 4,163,160 + Echvi_3513 0.28 +0.9 4,163,160 + Echvi_3513 0.28 -0.0 4,163,160 + Echvi_3513 0.28 +0.7 4,163,160 + Echvi_3513 0.28 +0.4 4,163,160 + Echvi_3513 0.28 -3.0 4,163,161 - Echvi_3513 0.28 +0.9 4,163,161 - Echvi_3513 0.28 -0.6 4,163,161 - Echvi_3513 0.28 -0.4 4,163,161 - Echvi_3513 0.28 -1.6 4,163,163 - Echvi_3513 0.28 +0.5 4,163,190 - Echvi_3513 0.31 +0.9 4,163,195 - Echvi_3513 0.31 +1.1 4,163,195 - Echvi_3513 0.31 +1.0 4,163,195 - Echvi_3513 0.31 +0.3 4,163,234 + Echvi_3513 0.34 -1.3 4,163,234 + Echvi_3513 0.34 -0.0 4,163,234 + Echvi_3513 0.34 -0.7 4,163,235 - Echvi_3513 0.34 -0.3 4,163,236 + Echvi_3513 0.34 -1.3 4,163,237 - Echvi_3513 0.34 +1.7 4,163,237 - Echvi_3513 0.34 -3.3 4,163,247 + Echvi_3513 0.35 -0.6 4,163,248 - Echvi_3513 0.35 +0.2 4,163,250 + Echvi_3513 0.36 -2.1 4,163,251 - Echvi_3513 0.36 -0.7 4,163,251 - Echvi_3513 0.36 +0.3 4,163,343 + Echvi_3513 0.43 -0.3 4,163,343 + Echvi_3513 0.43 -0.9 4,163,344 - Echvi_3513 0.43 +1.2 4,163,346 + Echvi_3513 0.43 +3.1 4,163,346 + Echvi_3513 0.43 -1.3 4,163,346 + Echvi_3513 0.43 +0.1 4,163,347 - Echvi_3513 0.44 +0.6 4,163,358 - Echvi_3513 0.44 -0.1 4,163,500 - Echvi_3513 0.56 +1.0 4,163,549 + Echvi_3513 0.60 -3.4 4,163,633 + Echvi_3513 0.67 -0.5 4,163,634 - Echvi_3513 0.67 +0.1 4,163,654 + Echvi_3513 0.69 -0.4 4,163,655 - Echvi_3513 0.69 +0.4 4,163,674 - Echvi_3513 0.70 +1.6 4,163,762 + Echvi_3513 0.78 +1.3 4,163,790 + Echvi_3513 0.80 +1.1 4,163,795 + Echvi_3513 0.80 -1.2 4,163,842 + Echvi_3513 0.84 +1.5 4,163,842 + Echvi_3513 0.84 -0.5 4,163,843 - Echvi_3513 0.84 -0.0 4,163,888 - Echvi_3513 0.88 +1.1 4,163,979 + -0.4 4,163,979 + +1.3 4,163,979 + -1.2 4,163,979 + -0.7 4,163,980 - -1.3 4,163,980 - +1.6 4,163,980 - -1.7 4,163,980 - +0.4 4,163,980 - +0.6 4,164,012 + +2.1 4,164,012 + -1.0 4,164,021 + -1.3 4,164,036 + +0.5 4,164,036 + +2.2 4,164,047 - +1.5 4,164,052 + -1.6 4,164,056 - +0.7 4,164,080 - -0.6 4,164,089 + -2.0 4,164,113 + -0.9 4,164,114 - +0.6 4,164,137 + -0.1 4,164,137 + -1.3 4,164,137 + -0.5 4,164,137 + -1.1 4,164,137 + -1.7 4,164,191 + +1.3 4,164,192 - -0.9 4,164,194 + -1.4 4,164,194 + -3.7 4,164,195 - -0.3 4,164,195 - +0.7 4,164,195 - -1.0 4,164,195 - +2.3 4,164,198 + -1.0 4,164,198 + -1.8 4,164,199 - -0.1 4,164,199 - +1.1 4,164,199 - +1.2 4,164,199 - +0.4 4,164,211 - +0.7 4,164,236 + -2.5 4,164,237 - +1.1 4,164,246 - +0.2 4,164,246 - +0.4 4,164,336 + Echvi_3514 0.10 -0.3 4,164,336 + Echvi_3514 0.10 -0.2 4,164,337 - Echvi_3514 0.10 -0.1 4,164,337 - Echvi_3514 0.10 +0.0 4,164,368 + Echvi_3514 0.14 +0.7 4,164,369 - Echvi_3514 0.14 +0.2 4,164,381 - Echvi_3514 0.15 -0.6 4,164,403 + Echvi_3514 0.18 -1.0 4,164,404 - Echvi_3514 0.18 -0.4 4,164,404 - Echvi_3514 0.18 -0.8 4,164,404 - Echvi_3514 0.18 +2.1 4,164,499 - Echvi_3514 0.29 +0.3 4,164,499 - Echvi_3514 0.29 -0.4 4,164,510 - Echvi_3514 0.30 -0.0 4,164,510 - Echvi_3514 0.30 +1.7 4,164,510 - Echvi_3514 0.30 -0.1 4,164,574 + Echvi_3514 0.38 -0.5 4,164,681 + Echvi_3514 0.50 +1.3 4,164,682 - Echvi_3514 0.50 +0.4 4,164,684 + Echvi_3514 0.50 +0.5 4,164,691 + Echvi_3514 0.51 +0.2 4,164,705 + Echvi_3514 0.53 -0.4 4,164,757 - Echvi_3514 0.59 +2.1 4,164,785 + Echvi_3514 0.62 +1.1 4,164,785 + Echvi_3514 0.62 +0.1 4,164,786 - Echvi_3514 0.62 +0.5 4,164,786 - Echvi_3514 0.62 -0.5 4,164,786 - Echvi_3514 0.62 +0.1 4,164,789 + Echvi_3514 0.62 +1.3 4,164,789 + Echvi_3514 0.62 -0.9 4,164,789 + Echvi_3514 0.62 +0.5 4,164,790 - Echvi_3514 0.63 +0.7 4,164,790 - Echvi_3514 0.63 +0.5 4,164,790 - Echvi_3514 0.63 -1.2 4,164,790 - Echvi_3514 0.63 +2.3 4,164,790 - Echvi_3514 0.63 -1.3 4,164,935 + Echvi_3514 0.79 -0.9 4,164,935 + Echvi_3514 0.79 -1.0 4,164,980 - Echvi_3514 0.85 +0.3 4,164,980 - Echvi_3514 0.85 +0.4
Or see this region's nucleotide sequence