Experiment: Casamino Acids (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0782 and Echvi_0783 are separated by 287 nucleotides Echvi_0783 and Echvi_0784 are separated by 173 nucleotides
Echvi_0782: Echvi_0782 - Uncharacterized membrane protein (homolog of Drosophila rhomboid), at 882,606 to 883,526
_0782
Echvi_0783: Echvi_0783 - hypothetical protein, at 883,814 to 885,331
_0783
Echvi_0784: Echvi_0784 - ATP-dependent DNA helicase RecQ, at 885,505 to 887,631
_0784
Position (kb) 883
884
885
886 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 882.827 kb on + strand, within Echvi_0782 at 882.827 kb on + strand, within Echvi_0782 at 882.827 kb on + strand, within Echvi_0782 at 882.827 kb on + strand, within Echvi_0782 at 882.831 kb on + strand, within Echvi_0782 at 882.831 kb on + strand, within Echvi_0782 at 882.831 kb on + strand, within Echvi_0782 at 882.831 kb on + strand, within Echvi_0782 at 882.831 kb on + strand at 882.831 kb on + strand, within Echvi_0782 at 882.831 kb on + strand, within Echvi_0782 at 882.831 kb on + strand, within Echvi_0782 at 882.832 kb on - strand, within Echvi_0782 at 882.832 kb on - strand, within Echvi_0782 at 882.832 kb on - strand, within Echvi_0782 at 882.832 kb on - strand, within Echvi_0782 at 882.839 kb on + strand, within Echvi_0782 at 882.884 kb on - strand, within Echvi_0782 at 882.884 kb on - strand, within Echvi_0782 at 882.885 kb on + strand, within Echvi_0782 at 882.886 kb on - strand, within Echvi_0782 at 882.913 kb on - strand, within Echvi_0782 at 882.942 kb on + strand, within Echvi_0782 at 882.942 kb on + strand, within Echvi_0782 at 882.942 kb on + strand, within Echvi_0782 at 882.943 kb on - strand, within Echvi_0782 at 882.976 kb on - strand, within Echvi_0782 at 882.976 kb on - strand, within Echvi_0782 at 882.987 kb on + strand, within Echvi_0782 at 882.988 kb on - strand, within Echvi_0782 at 882.988 kb on - strand, within Echvi_0782 at 882.995 kb on - strand, within Echvi_0782 at 883.009 kb on + strand, within Echvi_0782 at 883.009 kb on + strand, within Echvi_0782 at 883.009 kb on + strand, within Echvi_0782 at 883.010 kb on - strand, within Echvi_0782 at 883.056 kb on + strand, within Echvi_0782 at 883.146 kb on - strand, within Echvi_0782 at 883.147 kb on + strand, within Echvi_0782 at 883.148 kb on - strand, within Echvi_0782 at 883.153 kb on - strand, within Echvi_0782 at 883.228 kb on + strand, within Echvi_0782 at 883.233 kb on + strand, within Echvi_0782 at 883.237 kb on + strand, within Echvi_0782 at 883.237 kb on + strand, within Echvi_0782 at 883.237 kb on + strand, within Echvi_0782 at 883.237 kb on + strand, within Echvi_0782 at 883.237 kb on + strand, within Echvi_0782 at 883.237 kb on + strand, within Echvi_0782 at 883.237 kb on + strand, within Echvi_0782 at 883.238 kb on - strand, within Echvi_0782 at 883.238 kb on - strand, within Echvi_0782 at 883.238 kb on - strand, within Echvi_0782 at 883.238 kb on - strand, within Echvi_0782 at 883.238 kb on - strand, within Echvi_0782 at 883.238 kb on - strand, within Echvi_0782 at 883.239 kb on + strand, within Echvi_0782 at 883.239 kb on + strand, within Echvi_0782 at 883.239 kb on + strand, within Echvi_0782 at 883.239 kb on + strand, within Echvi_0782 at 883.239 kb on + strand, within Echvi_0782 at 883.240 kb on - strand, within Echvi_0782 at 883.240 kb on - strand, within Echvi_0782 at 883.365 kb on + strand, within Echvi_0782 at 883.366 kb on - strand, within Echvi_0782 at 883.366 kb on - strand, within Echvi_0782 at 883.520 kb on + strand at 883.521 kb on - strand at 883.521 kb on - strand at 883.524 kb on + strand at 883.524 kb on + strand at 883.524 kb on + strand at 883.525 kb on - strand at 883.528 kb on - strand at 883.528 kb on - strand at 883.530 kb on + strand at 883.530 kb on + strand at 883.530 kb on + strand at 883.530 kb on + strand at 883.534 kb on + strand at 883.542 kb on - strand at 883.542 kb on - strand at 883.542 kb on - strand at 883.545 kb on + strand at 883.545 kb on + strand at 883.545 kb on + strand at 883.545 kb on + strand at 883.545 kb on + strand at 883.546 kb on - strand at 883.546 kb on - strand at 883.546 kb on - strand at 883.549 kb on - strand at 883.647 kb on - strand at 883.647 kb on - strand at 883.687 kb on + strand at 883.707 kb on - strand at 883.707 kb on - strand at 883.820 kb on + strand at 883.822 kb on + strand at 883.836 kb on + strand at 883.901 kb on + strand at 883.901 kb on + strand at 883.901 kb on + strand at 883.901 kb on + strand at 883.938 kb on + strand at 883.960 kb on - strand at 883.975 kb on + strand, within Echvi_0783 at 883.976 kb on - strand, within Echvi_0783 at 884.084 kb on - strand, within Echvi_0783 at 884.090 kb on - strand, within Echvi_0783 at 884.093 kb on + strand, within Echvi_0783 at 884.093 kb on + strand, within Echvi_0783 at 884.094 kb on - strand, within Echvi_0783 at 884.094 kb on - strand, within Echvi_0783 at 884.163 kb on + strand, within Echvi_0783 at 884.163 kb on + strand, within Echvi_0783 at 884.163 kb on + strand, within Echvi_0783 at 884.164 kb on - strand, within Echvi_0783 at 884.164 kb on - strand, within Echvi_0783 at 884.164 kb on - strand, within Echvi_0783 at 884.200 kb on - strand, within Echvi_0783 at 884.200 kb on - strand, within Echvi_0783 at 884.200 kb on - strand, within Echvi_0783 at 884.214 kb on + strand, within Echvi_0783 at 884.214 kb on + strand, within Echvi_0783 at 884.215 kb on - strand, within Echvi_0783 at 884.282 kb on + strand, within Echvi_0783 at 884.283 kb on - strand, within Echvi_0783 at 884.283 kb on - strand, within Echvi_0783 at 884.301 kb on + strand, within Echvi_0783 at 884.301 kb on + strand, within Echvi_0783 at 884.302 kb on - strand, within Echvi_0783 at 884.418 kb on + strand, within Echvi_0783 at 884.419 kb on - strand, within Echvi_0783 at 884.433 kb on - strand, within Echvi_0783 at 884.443 kb on + strand, within Echvi_0783 at 884.558 kb on - strand, within Echvi_0783 at 884.558 kb on - strand, within Echvi_0783 at 884.567 kb on + strand, within Echvi_0783 at 884.567 kb on + strand, within Echvi_0783 at 884.568 kb on - strand, within Echvi_0783 at 884.568 kb on - strand, within Echvi_0783 at 884.568 kb on - strand, within Echvi_0783 at 884.568 kb on - strand, within Echvi_0783 at 884.570 kb on + strand, within Echvi_0783 at 884.576 kb on - strand, within Echvi_0783 at 884.623 kb on + strand, within Echvi_0783 at 884.624 kb on - strand, within Echvi_0783 at 884.675 kb on + strand, within Echvi_0783 at 884.675 kb on + strand, within Echvi_0783 at 884.675 kb on + strand, within Echvi_0783 at 884.675 kb on + strand, within Echvi_0783 at 884.675 kb on + strand, within Echvi_0783 at 884.676 kb on - strand, within Echvi_0783 at 884.676 kb on - strand, within Echvi_0783 at 884.677 kb on + strand, within Echvi_0783 at 884.677 kb on + strand, within Echvi_0783 at 884.684 kb on + strand, within Echvi_0783 at 884.685 kb on - strand, within Echvi_0783 at 884.707 kb on + strand, within Echvi_0783 at 884.807 kb on + strand, within Echvi_0783 at 884.807 kb on + strand, within Echvi_0783 at 884.807 kb on + strand, within Echvi_0783 at 884.965 kb on - strand, within Echvi_0783 at 884.965 kb on - strand, within Echvi_0783 at 884.988 kb on + strand, within Echvi_0783 at 884.988 kb on + strand, within Echvi_0783 at 884.989 kb on - strand, within Echvi_0783 at 884.990 kb on + strand, within Echvi_0783 at 884.990 kb on + strand, within Echvi_0783 at 884.994 kb on - strand, within Echvi_0783 at 885.058 kb on - strand, within Echvi_0783 at 885.174 kb on - strand, within Echvi_0783 at 885.185 kb on - strand at 885.185 kb on - strand at 885.207 kb on + strand at 885.207 kb on + strand at 885.207 kb on + strand at 885.237 kb on + strand at 885.241 kb on + strand at 885.241 kb on + strand at 885.241 kb on + strand at 885.242 kb on - strand at 885.242 kb on - strand at 885.242 kb on - strand at 885.242 kb on - strand at 885.242 kb on - strand at 885.242 kb on - strand at 885.242 kb on - strand at 885.242 kb on - strand at 885.247 kb on - strand at 885.350 kb on + strand at 885.351 kb on - strand at 885.392 kb on + strand at 885.471 kb on - strand at 885.471 kb on - strand at 885.477 kb on - strand at 885.525 kb on - strand at 885.529 kb on - strand at 885.529 kb on - strand at 885.539 kb on - strand at 885.545 kb on - strand at 885.549 kb on + strand at 885.550 kb on - strand at 885.590 kb on + strand at 885.641 kb on + strand at 885.687 kb on + strand at 885.687 kb on + strand at 885.757 kb on + strand, within Echvi_0784 at 885.835 kb on + strand, within Echvi_0784 at 885.835 kb on + strand, within Echvi_0784 at 885.836 kb on - strand, within Echvi_0784 at 885.917 kb on + strand, within Echvi_0784 at 885.917 kb on + strand, within Echvi_0784 at 885.917 kb on + strand, within Echvi_0784 at 885.918 kb on - strand, within Echvi_0784 at 885.968 kb on - strand, within Echvi_0784 at 885.968 kb on - strand, within Echvi_0784 at 885.968 kb on - strand, within Echvi_0784 at 886.007 kb on + strand, within Echvi_0784 at 886.007 kb on + strand, within Echvi_0784 at 886.017 kb on - strand, within Echvi_0784 at 886.123 kb on - strand, within Echvi_0784 at 886.123 kb on - strand, within Echvi_0784 at 886.123 kb on - strand, within Echvi_0784 at 886.126 kb on + strand, within Echvi_0784 at 886.126 kb on + strand, within Echvi_0784 at 886.181 kb on - strand, within Echvi_0784 at 886.230 kb on - strand, within Echvi_0784
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino Acids (N) remove 882,827 + Echvi_0782 0.24 -0.4 882,827 + Echvi_0782 0.24 -0.2 882,827 + Echvi_0782 0.24 +1.1 882,827 + Echvi_0782 0.24 +0.9 882,831 + Echvi_0782 0.24 +0.3 882,831 + Echvi_0782 0.24 -2.0 882,831 + Echvi_0782 0.24 +0.4 882,831 + Echvi_0782 0.24 +1.1 882,831 + +2.4 882,831 + Echvi_0782 0.24 -0.9 882,831 + Echvi_0782 0.24 +0.2 882,831 + Echvi_0782 0.24 +0.2 882,832 - Echvi_0782 0.25 -0.1 882,832 - Echvi_0782 0.25 +0.3 882,832 - Echvi_0782 0.25 -1.1 882,832 - Echvi_0782 0.25 -0.4 882,839 + Echvi_0782 0.25 -0.8 882,884 - Echvi_0782 0.30 -0.9 882,884 - Echvi_0782 0.30 -3.0 882,885 + Echvi_0782 0.30 -1.7 882,886 - Echvi_0782 0.30 +0.8 882,913 - Echvi_0782 0.33 +0.2 882,942 + Echvi_0782 0.36 -0.7 882,942 + Echvi_0782 0.36 -0.9 882,942 + Echvi_0782 0.36 -1.5 882,943 - Echvi_0782 0.37 -1.3 882,976 - Echvi_0782 0.40 +0.6 882,976 - Echvi_0782 0.40 -1.1 882,987 + Echvi_0782 0.41 -0.1 882,988 - Echvi_0782 0.41 +0.1 882,988 - Echvi_0782 0.41 +1.1 882,995 - Echvi_0782 0.42 -0.2 883,009 + Echvi_0782 0.44 -0.5 883,009 + Echvi_0782 0.44 -1.3 883,009 + Echvi_0782 0.44 -1.0 883,010 - Echvi_0782 0.44 -1.0 883,056 + Echvi_0782 0.49 +0.0 883,146 - Echvi_0782 0.59 +1.3 883,147 + Echvi_0782 0.59 +1.0 883,148 - Echvi_0782 0.59 +0.1 883,153 - Echvi_0782 0.59 -0.2 883,228 + Echvi_0782 0.68 +0.1 883,233 + Echvi_0782 0.68 +0.0 883,237 + Echvi_0782 0.69 -0.7 883,237 + Echvi_0782 0.69 +0.1 883,237 + Echvi_0782 0.69 +0.5 883,237 + Echvi_0782 0.69 -0.5 883,237 + Echvi_0782 0.69 +1.7 883,237 + Echvi_0782 0.69 +0.0 883,237 + Echvi_0782 0.69 -2.0 883,238 - Echvi_0782 0.69 -0.3 883,238 - Echvi_0782 0.69 +0.3 883,238 - Echvi_0782 0.69 +1.3 883,238 - Echvi_0782 0.69 +1.1 883,238 - Echvi_0782 0.69 -0.1 883,238 - Echvi_0782 0.69 -2.9 883,239 + Echvi_0782 0.69 -1.2 883,239 + Echvi_0782 0.69 -2.3 883,239 + Echvi_0782 0.69 -0.6 883,239 + Echvi_0782 0.69 +1.2 883,239 + Echvi_0782 0.69 -0.1 883,240 - Echvi_0782 0.69 +1.1 883,240 - Echvi_0782 0.69 +0.6 883,365 + Echvi_0782 0.82 -0.8 883,366 - Echvi_0782 0.83 -0.9 883,366 - Echvi_0782 0.83 -1.9 883,520 + +1.8 883,521 - +0.6 883,521 - -0.5 883,524 + -0.6 883,524 + +1.4 883,524 + +0.5 883,525 - -0.8 883,528 - +0.4 883,528 - +0.2 883,530 + -0.3 883,530 + -0.1 883,530 + -0.3 883,530 + -0.8 883,534 + -1.5 883,542 - -0.5 883,542 - -0.4 883,542 - -0.2 883,545 + -0.3 883,545 + -0.4 883,545 + -1.2 883,545 + -0.1 883,545 + +1.0 883,546 - -0.3 883,546 - -0.2 883,546 - -0.3 883,549 - +0.8 883,647 - -0.6 883,647 - -1.1 883,687 + -1.1 883,707 - +0.0 883,707 - +0.3 883,820 + -0.1 883,822 + -1.4 883,836 + -0.7 883,901 + -1.1 883,901 + -2.0 883,901 + -0.1 883,901 + -1.5 883,938 + +3.0 883,960 - -0.5 883,975 + Echvi_0783 0.11 +0.0 883,976 - Echvi_0783 0.11 -1.0 884,084 - Echvi_0783 0.18 -0.2 884,090 - Echvi_0783 0.18 -2.2 884,093 + Echvi_0783 0.18 -0.3 884,093 + Echvi_0783 0.18 -0.2 884,094 - Echvi_0783 0.18 -2.3 884,094 - Echvi_0783 0.18 -0.9 884,163 + Echvi_0783 0.23 -2.5 884,163 + Echvi_0783 0.23 +0.8 884,163 + Echvi_0783 0.23 -1.0 884,164 - Echvi_0783 0.23 -1.1 884,164 - Echvi_0783 0.23 +1.2 884,164 - Echvi_0783 0.23 -0.2 884,200 - Echvi_0783 0.25 -0.3 884,200 - Echvi_0783 0.25 -0.4 884,200 - Echvi_0783 0.25 +0.3 884,214 + Echvi_0783 0.26 -0.5 884,214 + Echvi_0783 0.26 -0.4 884,215 - Echvi_0783 0.26 -1.8 884,282 + Echvi_0783 0.31 +0.6 884,283 - Echvi_0783 0.31 -0.2 884,283 - Echvi_0783 0.31 +1.9 884,301 + Echvi_0783 0.32 +0.7 884,301 + Echvi_0783 0.32 -0.7 884,302 - Echvi_0783 0.32 -0.1 884,418 + Echvi_0783 0.40 -0.2 884,419 - Echvi_0783 0.40 -0.9 884,433 - Echvi_0783 0.41 +0.2 884,443 + Echvi_0783 0.41 -0.3 884,558 - Echvi_0783 0.49 +0.5 884,558 - Echvi_0783 0.49 -0.9 884,567 + Echvi_0783 0.50 -0.6 884,567 + Echvi_0783 0.50 -1.9 884,568 - Echvi_0783 0.50 +0.2 884,568 - Echvi_0783 0.50 +0.5 884,568 - Echvi_0783 0.50 +0.2 884,568 - Echvi_0783 0.50 +0.6 884,570 + Echvi_0783 0.50 +0.5 884,576 - Echvi_0783 0.50 +0.4 884,623 + Echvi_0783 0.53 +0.8 884,624 - Echvi_0783 0.53 -0.9 884,675 + Echvi_0783 0.57 +1.9 884,675 + Echvi_0783 0.57 +0.1 884,675 + Echvi_0783 0.57 +1.0 884,675 + Echvi_0783 0.57 -1.7 884,675 + Echvi_0783 0.57 -0.4 884,676 - Echvi_0783 0.57 -1.8 884,676 - Echvi_0783 0.57 +0.4 884,677 + Echvi_0783 0.57 -0.0 884,677 + Echvi_0783 0.57 -0.4 884,684 + Echvi_0783 0.57 -0.2 884,685 - Echvi_0783 0.57 +0.1 884,707 + Echvi_0783 0.59 -0.8 884,807 + Echvi_0783 0.65 -1.4 884,807 + Echvi_0783 0.65 +1.5 884,807 + Echvi_0783 0.65 +0.1 884,965 - Echvi_0783 0.76 +0.1 884,965 - Echvi_0783 0.76 +0.6 884,988 + Echvi_0783 0.77 -0.7 884,988 + Echvi_0783 0.77 +0.4 884,989 - Echvi_0783 0.77 -1.7 884,990 + Echvi_0783 0.77 -0.3 884,990 + Echvi_0783 0.77 -0.6 884,994 - Echvi_0783 0.78 +2.9 885,058 - Echvi_0783 0.82 -1.5 885,174 - Echvi_0783 0.90 +1.6 885,185 - -2.5 885,185 - -0.1 885,207 + -0.9 885,207 + -1.3 885,207 + -1.7 885,237 + -1.4 885,241 + -1.5 885,241 + -1.2 885,241 + +0.8 885,242 - +2.4 885,242 - +0.1 885,242 - +0.4 885,242 - +0.2 885,242 - -2.1 885,242 - -1.2 885,242 - -0.3 885,242 - +0.0 885,247 - -3.4 885,350 + +0.5 885,351 - -0.0 885,392 + -3.2 885,471 - -0.0 885,471 - -0.7 885,477 - -0.2 885,525 - +0.5 885,529 - -0.8 885,529 - -0.5 885,539 - +1.3 885,545 - +0.1 885,549 + +2.3 885,550 - +0.1 885,590 + +0.8 885,641 + +0.8 885,687 + -1.0 885,687 + +0.8 885,757 + Echvi_0784 0.12 +0.5 885,835 + Echvi_0784 0.16 -1.3 885,835 + Echvi_0784 0.16 -0.7 885,836 - Echvi_0784 0.16 +1.4 885,917 + Echvi_0784 0.19 -2.2 885,917 + Echvi_0784 0.19 +1.5 885,917 + Echvi_0784 0.19 +0.9 885,918 - Echvi_0784 0.19 +0.9 885,968 - Echvi_0784 0.22 +0.7 885,968 - Echvi_0784 0.22 -0.2 885,968 - Echvi_0784 0.22 +0.4 886,007 + Echvi_0784 0.24 -0.5 886,007 + Echvi_0784 0.24 -0.2 886,017 - Echvi_0784 0.24 +0.4 886,123 - Echvi_0784 0.29 +1.8 886,123 - Echvi_0784 0.29 +0.6 886,123 - Echvi_0784 0.29 -0.0 886,126 + Echvi_0784 0.29 -0.6 886,126 + Echvi_0784 0.29 +1.0 886,181 - Echvi_0784 0.32 +0.2 886,230 - Echvi_0784 0.34 +2.2
Or see this region's nucleotide sequence