Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21665

Experiment: m.b. A22 0.04 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_21655 and CA264_21660 are separated by 11 nucleotidesCA264_21660 and CA264_21665 are separated by 102 nucleotides CA264_21655: CA264_21655 - MBL fold hydrolase, at 199,832 to 201,199 _21655 CA264_21660: CA264_21660 - ATPase, at 201,211 to 202,068 _21660 CA264_21665: CA264_21665 - 2-hydroxyacid dehydrogenase, at 202,171 to 203,169 _21665 Position (kb) 202 203 204Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 201.179 kb on + strandat 201.179 kb on + strandat 201.185 kb on + strandat 201.186 kb on - strandat 201.200 kb on - strandat 201.213 kb on - strandat 201.237 kb on + strandat 201.241 kb on + strandat 201.241 kb on + strandat 201.242 kb on - strandat 201.242 kb on - strandat 201.322 kb on + strand, within CA264_21660at 201.322 kb on + strand, within CA264_21660at 201.323 kb on - strand, within CA264_21660at 201.323 kb on - strand, within CA264_21660at 201.323 kb on - strand, within CA264_21660at 201.337 kb on + strand, within CA264_21660at 201.378 kb on + strand, within CA264_21660at 201.406 kb on + strand, within CA264_21660at 201.433 kb on + strand, within CA264_21660at 201.433 kb on + strand, within CA264_21660at 201.433 kb on + strand, within CA264_21660at 201.434 kb on - strand, within CA264_21660at 201.453 kb on - strand, within CA264_21660at 201.472 kb on + strand, within CA264_21660at 201.486 kb on + strand, within CA264_21660at 201.487 kb on - strand, within CA264_21660at 201.487 kb on - strand, within CA264_21660at 201.565 kb on + strand, within CA264_21660at 201.571 kb on + strand, within CA264_21660at 201.572 kb on - strand, within CA264_21660at 201.611 kb on + strand, within CA264_21660at 201.612 kb on - strand, within CA264_21660at 201.667 kb on + strand, within CA264_21660at 201.672 kb on + strand, within CA264_21660at 201.768 kb on - strand, within CA264_21660at 201.817 kb on + strand, within CA264_21660at 201.839 kb on - strand, within CA264_21660at 201.900 kb on - strand, within CA264_21660at 201.900 kb on - strand, within CA264_21660at 201.900 kb on - strand, within CA264_21660at 201.913 kb on - strand, within CA264_21660at 202.048 kb on + strandat 202.049 kb on - strandat 202.049 kb on - strandat 202.049 kb on - strandat 202.050 kb on + strandat 202.052 kb on + strandat 202.052 kb on + strandat 202.056 kb on + strandat 202.057 kb on - strandat 202.085 kb on + strandat 202.145 kb on + strandat 202.146 kb on - strandat 202.167 kb on - strandat 202.172 kb on + strandat 202.173 kb on - strandat 202.232 kb on + strandat 202.232 kb on + strandat 202.293 kb on + strand, within CA264_21665at 202.293 kb on + strand, within CA264_21665at 202.296 kb on + strand, within CA264_21665at 202.296 kb on + strand, within CA264_21665at 202.297 kb on - strand, within CA264_21665at 202.330 kb on + strand, within CA264_21665at 202.331 kb on - strand, within CA264_21665at 202.331 kb on - strand, within CA264_21665at 202.391 kb on + strand, within CA264_21665at 202.399 kb on + strand, within CA264_21665at 202.406 kb on - strand, within CA264_21665at 202.608 kb on - strand, within CA264_21665at 202.637 kb on + strand, within CA264_21665at 202.699 kb on + strand, within CA264_21665at 202.700 kb on - strand, within CA264_21665at 202.704 kb on + strand, within CA264_21665at 202.704 kb on + strand, within CA264_21665at 202.709 kb on - strand, within CA264_21665at 202.717 kb on + strand, within CA264_21665at 202.727 kb on - strand, within CA264_21665at 202.749 kb on + strand, within CA264_21665at 202.771 kb on + strand, within CA264_21665at 202.771 kb on + strand, within CA264_21665at 202.782 kb on + strand, within CA264_21665at 202.800 kb on + strand, within CA264_21665at 202.800 kb on + strand, within CA264_21665at 202.858 kb on + strand, within CA264_21665at 202.866 kb on - strand, within CA264_21665at 202.874 kb on + strand, within CA264_21665at 202.874 kb on + strand, within CA264_21665at 202.875 kb on - strand, within CA264_21665at 203.025 kb on + strand, within CA264_21665at 203.025 kb on + strand, within CA264_21665at 203.026 kb on - strand, within CA264_21665at 203.026 kb on - strand, within CA264_21665at 203.142 kb on + strandat 203.142 kb on + strandat 203.142 kb on + strandat 203.143 kb on - strandat 203.143 kb on - strandat 203.143 kb on - strandat 203.148 kb on + strandat 203.149 kb on - strandat 203.154 kb on - strandat 203.154 kb on - strandat 203.154 kb on - strandat 203.154 kb on - strandat 203.169 kb on + strandat 203.179 kb on + strandat 203.179 kb on + strandat 203.180 kb on - strandat 203.184 kb on - strandat 203.211 kb on + strandat 203.242 kb on + strandat 203.272 kb on + strandat 203.361 kb on + strandat 203.366 kb on + strandat 203.402 kb on + strandat 203.403 kb on - strandat 203.416 kb on + strandat 203.442 kb on - strandat 203.446 kb on + strandat 203.446 kb on + strandat 203.447 kb on - strandat 203.447 kb on - strandat 203.450 kb on + strandat 203.450 kb on + strandat 203.451 kb on - strandat 203.451 kb on - strandat 203.461 kb on + strandat 203.461 kb on + strandat 203.462 kb on - strandat 203.464 kb on + strandat 203.465 kb on - strandat 203.591 kb on + strandat 203.597 kb on + strandat 203.635 kb on + strandat 203.648 kb on + strandat 203.648 kb on + strandat 203.649 kb on - strandat 203.659 kb on - strandat 203.685 kb on + strandat 203.685 kb on + strandat 203.685 kb on + strandat 203.686 kb on - strandat 203.879 kb on + strandat 203.933 kb on - strandat 203.935 kb on + strandat 203.935 kb on + strandat 203.936 kb on - strandat 203.940 kb on + strandat 203.940 kb on + strandat 203.941 kb on - strandat 203.946 kb on + strandat 204.019 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
remove
201,179 + -3.3
201,179 + -0.3
201,185 + -0.8
201,186 - +0.2
201,200 - +0.4
201,213 - +0.4
201,237 + -0.6
201,241 + +0.1
201,241 + -0.9
201,242 - +3.2
201,242 - +0.6
201,322 + CA264_21660 0.13 -0.4
201,322 + CA264_21660 0.13 -1.2
201,323 - CA264_21660 0.13 +0.8
201,323 - CA264_21660 0.13 +1.5
201,323 - CA264_21660 0.13 +1.5
201,337 + CA264_21660 0.15 -1.1
201,378 + CA264_21660 0.19 +0.2
201,406 + CA264_21660 0.23 +0.9
201,433 + CA264_21660 0.26 -0.4
201,433 + CA264_21660 0.26 -2.2
201,433 + CA264_21660 0.26 -1.6
201,434 - CA264_21660 0.26 -0.0
201,453 - CA264_21660 0.28 +0.5
201,472 + CA264_21660 0.30 -0.5
201,486 + CA264_21660 0.32 -1.5
201,487 - CA264_21660 0.32 +2.0
201,487 - CA264_21660 0.32 +0.2
201,565 + CA264_21660 0.41 -1.6
201,571 + CA264_21660 0.42 -1.1
201,572 - CA264_21660 0.42 +0.4
201,611 + CA264_21660 0.47 +0.4
201,612 - CA264_21660 0.47 +0.1
201,667 + CA264_21660 0.53 -0.9
201,672 + CA264_21660 0.54 -2.7
201,768 - CA264_21660 0.65 +1.0
201,817 + CA264_21660 0.71 -0.0
201,839 - CA264_21660 0.73 +0.4
201,900 - CA264_21660 0.80 +0.6
201,900 - CA264_21660 0.80 +0.5
201,900 - CA264_21660 0.80 -0.2
201,913 - CA264_21660 0.82 +0.4
202,048 + +0.8
202,049 - +0.5
202,049 - +0.6
202,049 - +0.9
202,050 + -0.3
202,052 + -0.1
202,052 + +0.6
202,056 + -0.4
202,057 - +0.3
202,085 + +0.4
202,145 + -0.5
202,146 - +0.9
202,167 - +1.1
202,172 + +0.9
202,173 - +1.4
202,232 + -0.3
202,232 + +0.4
202,293 + CA264_21665 0.12 +0.2
202,293 + CA264_21665 0.12 +0.4
202,296 + CA264_21665 0.13 -0.2
202,296 + CA264_21665 0.13 -0.2
202,297 - CA264_21665 0.13 +0.5
202,330 + CA264_21665 0.16 +0.1
202,331 - CA264_21665 0.16 +0.4
202,331 - CA264_21665 0.16 +0.8
202,391 + CA264_21665 0.22 +0.2
202,399 + CA264_21665 0.23 +0.3
202,406 - CA264_21665 0.24 +0.4
202,608 - CA264_21665 0.44 +1.1
202,637 + CA264_21665 0.47 +0.1
202,699 + CA264_21665 0.53 -0.1
202,700 - CA264_21665 0.53 +0.4
202,704 + CA264_21665 0.53 +0.0
202,704 + CA264_21665 0.53 -0.4
202,709 - CA264_21665 0.54 +1.0
202,717 + CA264_21665 0.55 -0.1
202,727 - CA264_21665 0.56 +0.2
202,749 + CA264_21665 0.58 +0.0
202,771 + CA264_21665 0.60 +1.0
202,771 + CA264_21665 0.60 +0.4
202,782 + CA264_21665 0.61 -0.1
202,800 + CA264_21665 0.63 -0.1
202,800 + CA264_21665 0.63 -0.3
202,858 + CA264_21665 0.69 +0.3
202,866 - CA264_21665 0.70 +0.1
202,874 + CA264_21665 0.70 +0.9
202,874 + CA264_21665 0.70 +0.5
202,875 - CA264_21665 0.70 +0.5
203,025 + CA264_21665 0.85 +0.4
203,025 + CA264_21665 0.85 -0.4
203,026 - CA264_21665 0.86 +0.5
203,026 - CA264_21665 0.86 +0.6
203,142 + -0.3
203,142 + -0.7
203,142 + +0.0
203,143 - +0.7
203,143 - +0.7
203,143 - +0.7
203,148 + -0.2
203,149 - +0.4
203,154 - +0.7
203,154 - +0.5
203,154 - +0.8
203,154 - +0.8
203,169 + +0.1
203,179 + -0.1
203,179 + +0.5
203,180 - +0.9
203,184 - +0.4
203,211 + +0.6
203,242 + -0.3
203,272 + -0.3
203,361 + +0.2
203,366 + +1.3
203,402 + +0.2
203,403 - -0.8
203,416 + -0.5
203,442 - +1.0
203,446 + -1.9
203,446 + -0.1
203,447 - +1.6
203,447 - -0.5
203,450 + -0.5
203,450 + -0.6
203,451 - +0.6
203,451 - +1.2
203,461 + -0.3
203,461 + -0.2
203,462 - +0.8
203,464 + +1.3
203,465 - -0.2
203,591 + -0.6
203,597 + -1.4
203,635 + -0.2
203,648 + -0.7
203,648 + -0.4
203,649 - +0.4
203,659 - +1.0
203,685 + +0.7
203,685 + -0.6
203,685 + -0.6
203,686 - +0.8
203,879 + +0.6
203,933 - +0.3
203,935 + -0.3
203,935 + +0.6
203,936 - +0.2
203,940 + -0.5
203,940 + -0.8
203,941 - -0.4
203,946 + -0.2
204,019 - +1.4

Or see this region's nucleotide sequence