Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21350

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21340 and CA264_21345 are separated by 201 nucleotidesCA264_21345 and CA264_21350 are separated by 189 nucleotidesCA264_21350 and CA264_21355 are separated by 35 nucleotides CA264_21340: CA264_21340 - hypothetical protein, at 131,822 to 132,412 _21340 CA264_21345: CA264_21345 - transcriptional regulator, at 132,614 to 132,946 _21345 CA264_21350: CA264_21350 - nucleoside-diphosphate sugar epimerase, at 133,136 to 134,242 _21350 CA264_21355: CA264_21355 - vitamin K epoxide reductase, at 134,278 to 135,849 _21355 Position (kb) 133 134 135Strain fitness (log2 ratio) -3 -2 -1 0 1at 132.206 kb on - strand, within CA264_21340at 132.298 kb on + strand, within CA264_21340at 132.406 kb on + strandat 132.411 kb on - strandat 132.419 kb on + strandat 132.420 kb on - strandat 132.420 kb on - strandat 132.420 kb on - strandat 132.420 kb on - strandat 132.420 kb on - strandat 132.537 kb on - strandat 132.542 kb on + strandat 132.549 kb on - strandat 132.549 kb on - strandat 132.568 kb on - strandat 132.568 kb on - strandat 132.605 kb on - strandat 132.643 kb on + strandat 132.644 kb on - strandat 132.644 kb on - strandat 132.652 kb on - strand, within CA264_21345at 132.703 kb on - strand, within CA264_21345at 132.731 kb on - strand, within CA264_21345at 132.758 kb on - strand, within CA264_21345at 132.802 kb on - strand, within CA264_21345at 132.802 kb on - strand, within CA264_21345at 132.831 kb on + strand, within CA264_21345at 132.832 kb on - strand, within CA264_21345at 132.832 kb on - strand, within CA264_21345at 132.842 kb on + strand, within CA264_21345at 132.886 kb on + strand, within CA264_21345at 132.947 kb on + strandat 133.035 kb on - strandat 133.039 kb on - strandat 133.039 kb on - strandat 133.039 kb on - strandat 133.044 kb on + strandat 133.061 kb on - strandat 133.063 kb on - strandat 133.079 kb on + strandat 133.079 kb on + strandat 133.085 kb on + strandat 133.087 kb on + strandat 133.087 kb on + strandat 133.088 kb on - strandat 133.096 kb on - strandat 133.101 kb on + strandat 133.101 kb on + strandat 133.101 kb on + strandat 133.102 kb on - strandat 133.102 kb on - strandat 133.102 kb on - strandat 133.102 kb on - strandat 133.112 kb on - strandat 133.120 kb on - strandat 133.175 kb on - strandat 133.212 kb on + strandat 133.213 kb on - strandat 133.213 kb on - strandat 133.213 kb on - strandat 133.213 kb on - strandat 133.219 kb on + strandat 133.219 kb on + strandat 133.219 kb on + strandat 133.222 kb on + strandat 133.247 kb on + strand, within CA264_21350at 133.248 kb on - strand, within CA264_21350at 133.248 kb on - strand, within CA264_21350at 133.248 kb on - strandat 133.257 kb on + strand, within CA264_21350at 133.319 kb on - strand, within CA264_21350at 133.319 kb on - strand, within CA264_21350at 133.321 kb on + strand, within CA264_21350at 133.322 kb on - strand, within CA264_21350at 133.383 kb on + strand, within CA264_21350at 133.383 kb on + strand, within CA264_21350at 133.384 kb on - strand, within CA264_21350at 133.384 kb on - strand, within CA264_21350at 133.410 kb on - strand, within CA264_21350at 133.412 kb on + strand, within CA264_21350at 133.453 kb on - strand, within CA264_21350at 133.458 kb on + strand, within CA264_21350at 133.459 kb on - strandat 133.538 kb on + strand, within CA264_21350at 133.539 kb on - strand, within CA264_21350at 133.585 kb on - strand, within CA264_21350at 133.617 kb on + strand, within CA264_21350at 133.618 kb on - strand, within CA264_21350at 133.618 kb on - strand, within CA264_21350at 133.618 kb on - strand, within CA264_21350at 133.686 kb on + strand, within CA264_21350at 133.686 kb on + strand, within CA264_21350at 133.687 kb on - strand, within CA264_21350at 133.687 kb on - strand, within CA264_21350at 133.688 kb on + strand, within CA264_21350at 133.689 kb on - strand, within CA264_21350at 133.689 kb on - strand, within CA264_21350at 133.708 kb on + strand, within CA264_21350at 133.708 kb on + strand, within CA264_21350at 133.729 kb on - strand, within CA264_21350at 133.729 kb on - strand, within CA264_21350at 133.729 kb on - strand, within CA264_21350at 133.738 kb on - strand, within CA264_21350at 133.738 kb on - strand, within CA264_21350at 133.738 kb on - strand, within CA264_21350at 133.739 kb on + strand, within CA264_21350at 133.740 kb on - strand, within CA264_21350at 133.740 kb on - strand, within CA264_21350at 133.753 kb on + strand, within CA264_21350at 133.766 kb on + strand, within CA264_21350at 133.766 kb on + strand, within CA264_21350at 133.904 kb on + strand, within CA264_21350at 133.905 kb on - strand, within CA264_21350at 133.926 kb on + strand, within CA264_21350at 133.962 kb on - strand, within CA264_21350at 134.044 kb on - strand, within CA264_21350at 134.178 kb on - strandat 134.240 kb on + strandat 134.264 kb on - strandat 134.264 kb on - strandat 134.264 kb on - strandat 134.272 kb on + strandat 134.273 kb on - strandat 134.475 kb on + strand, within CA264_21355at 134.476 kb on - strand, within CA264_21355at 134.523 kb on - strand, within CA264_21355at 134.526 kb on + strand, within CA264_21355at 134.631 kb on + strand, within CA264_21355at 134.632 kb on - strand, within CA264_21355at 134.707 kb on + strand, within CA264_21355at 134.784 kb on - strand, within CA264_21355at 134.867 kb on - strand, within CA264_21355at 134.905 kb on + strand, within CA264_21355at 134.905 kb on + strand, within CA264_21355at 134.906 kb on - strand, within CA264_21355at 135.001 kb on + strand, within CA264_21355at 135.083 kb on + strand, within CA264_21355at 135.193 kb on - strand, within CA264_21355

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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132,206 - CA264_21340 0.65 -0.0
132,298 + CA264_21340 0.81 -1.5
132,406 + -1.6
132,411 - -1.8
132,419 + +0.1
132,420 - -0.1
132,420 - -0.8
132,420 - -1.1
132,420 - -3.0
132,420 - -1.7
132,537 - -0.2
132,542 + -0.3
132,549 - -0.2
132,549 - -0.8
132,568 - +0.2
132,568 - -0.6
132,605 - -0.5
132,643 + -0.8
132,644 - -1.6
132,644 - -1.7
132,652 - CA264_21345 0.11 -1.3
132,703 - CA264_21345 0.27 -0.0
132,731 - CA264_21345 0.35 -0.7
132,758 - CA264_21345 0.43 -1.1
132,802 - CA264_21345 0.56 -0.0
132,802 - CA264_21345 0.56 -0.5
132,831 + CA264_21345 0.65 -0.6
132,832 - CA264_21345 0.65 -1.5
132,832 - CA264_21345 0.65 -1.6
132,842 + CA264_21345 0.68 +0.0
132,886 + CA264_21345 0.82 -0.0
132,947 + -0.6
133,035 - -1.0
133,039 - -1.7
133,039 - -1.4
133,039 - -1.2
133,044 + -0.1
133,061 - -0.9
133,063 - -1.5
133,079 + -0.0
133,079 + -0.8
133,085 + -0.8
133,087 + -0.1
133,087 + +0.0
133,088 - -1.6
133,096 - -1.2
133,101 + -0.5
133,101 + -0.5
133,101 + -1.5
133,102 - -0.9
133,102 - -1.2
133,102 - -1.8
133,102 - -1.9
133,112 - -1.4
133,120 - +0.4
133,175 - -1.4
133,212 + -1.7
133,213 - -0.8
133,213 - -0.8
133,213 - -0.3
133,213 - -1.4
133,219 + -0.2
133,219 + -0.2
133,219 + -0.6
133,222 + -0.0
133,247 + CA264_21350 0.10 +0.5
133,248 - CA264_21350 0.10 -0.1
133,248 - CA264_21350 0.10 -0.7
133,248 - -0.0
133,257 + CA264_21350 0.11 -0.6
133,319 - CA264_21350 0.17 -1.3
133,319 - CA264_21350 0.17 -0.1
133,321 + CA264_21350 0.17 +0.9
133,322 - CA264_21350 0.17 -0.4
133,383 + CA264_21350 0.22 +1.2
133,383 + CA264_21350 0.22 -0.4
133,384 - CA264_21350 0.22 -0.5
133,384 - CA264_21350 0.22 -1.1
133,410 - CA264_21350 0.25 -0.7
133,412 + CA264_21350 0.25 +0.2
133,453 - CA264_21350 0.29 +0.4
133,458 + CA264_21350 0.29 -0.4
133,459 - +0.4
133,538 + CA264_21350 0.36 -0.4
133,539 - CA264_21350 0.36 -0.6
133,585 - CA264_21350 0.41 -3.5
133,617 + CA264_21350 0.43 -0.1
133,618 - CA264_21350 0.44 +0.8
133,618 - CA264_21350 0.44 -0.8
133,618 - CA264_21350 0.44 -1.5
133,686 + CA264_21350 0.50 -0.5
133,686 + CA264_21350 0.50 -0.0
133,687 - CA264_21350 0.50 -0.4
133,687 - CA264_21350 0.50 -0.3
133,688 + CA264_21350 0.50 +0.2
133,689 - CA264_21350 0.50 +0.9
133,689 - CA264_21350 0.50 -0.6
133,708 + CA264_21350 0.52 -0.6
133,708 + CA264_21350 0.52 -0.2
133,729 - CA264_21350 0.54 -0.2
133,729 - CA264_21350 0.54 +1.7
133,729 - CA264_21350 0.54 -1.2
133,738 - CA264_21350 0.54 -1.3
133,738 - CA264_21350 0.54 -0.7
133,738 - CA264_21350 0.54 -0.2
133,739 + CA264_21350 0.54 +0.5
133,740 - CA264_21350 0.55 -0.8
133,740 - CA264_21350 0.55 -0.4
133,753 + CA264_21350 0.56 -0.3
133,766 + CA264_21350 0.57 -0.5
133,766 + CA264_21350 0.57 -0.0
133,904 + CA264_21350 0.69 -0.7
133,905 - CA264_21350 0.69 -0.4
133,926 + CA264_21350 0.71 -0.3
133,962 - CA264_21350 0.75 -0.3
134,044 - CA264_21350 0.82 -0.7
134,178 - -0.8
134,240 + -0.2
134,264 - -0.4
134,264 - -0.2
134,264 - -1.5
134,272 + -0.3
134,273 - -0.3
134,475 + CA264_21355 0.13 -0.2
134,476 - CA264_21355 0.13 +0.4
134,523 - CA264_21355 0.16 -0.1
134,526 + CA264_21355 0.16 -0.3
134,631 + CA264_21355 0.22 -0.3
134,632 - CA264_21355 0.23 -1.3
134,707 + CA264_21355 0.27 +0.6
134,784 - CA264_21355 0.32 +0.7
134,867 - CA264_21355 0.37 -0.8
134,905 + CA264_21355 0.40 +0.7
134,905 + CA264_21355 0.40 +1.4
134,906 - CA264_21355 0.40 -0.3
135,001 + CA264_21355 0.46 +1.0
135,083 + CA264_21355 0.51 -0.8
135,193 - CA264_21355 0.58 +1.6

Or see this region's nucleotide sequence