Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20520 and CA264_20525 are separated by 46 nucleotides CA264_20525 and CA264_20530 are separated by 23 nucleotides CA264_20530 and CA264_20535 are separated by 48 nucleotides CA264_20535 and CA264_20540 are separated by 193 nucleotides
CA264_20520: CA264_20520 - hypothetical protein, at 4,728,348 to 4,728,821
_20520
CA264_20525: CA264_20525 - prenyltransferase, at 4,728,868 to 4,729,776
_20525
CA264_20530: CA264_20530 - hypothetical protein, at 4,729,800 to 4,730,687
_20530
CA264_20535: CA264_20535 - hypothetical protein, at 4,730,736 to 4,731,239
_20535
CA264_20540: CA264_20540 - transglycosylase, at 4,731,433 to 4,733,763
_20540
Position (kb)
4729
4730
4731 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4728.811 kb on - strand at 4728.841 kb on + strand at 4728.841 kb on + strand at 4728.841 kb on + strand at 4728.841 kb on + strand at 4728.842 kb on - strand at 4728.842 kb on - strand at 4728.842 kb on - strand at 4728.843 kb on + strand at 4728.843 kb on + strand at 4728.843 kb on + strand at 4728.844 kb on - strand at 4728.852 kb on - strand at 4728.920 kb on - strand at 4729.064 kb on + strand, within CA264_20525 at 4729.065 kb on - strand, within CA264_20525 at 4729.096 kb on + strand, within CA264_20525 at 4729.119 kb on - strand, within CA264_20525 at 4729.291 kb on + strand, within CA264_20525 at 4729.308 kb on - strand, within CA264_20525 at 4729.308 kb on - strand, within CA264_20525 at 4729.308 kb on - strand, within CA264_20525 at 4729.308 kb on - strand, within CA264_20525 at 4729.308 kb on - strand, within CA264_20525 at 4729.382 kb on + strand, within CA264_20525 at 4729.410 kb on - strand, within CA264_20525 at 4729.468 kb on + strand, within CA264_20525 at 4729.556 kb on + strand, within CA264_20525 at 4729.556 kb on + strand, within CA264_20525 at 4729.569 kb on - strand, within CA264_20525 at 4729.578 kb on + strand, within CA264_20525 at 4729.603 kb on + strand, within CA264_20525 at 4729.604 kb on - strand, within CA264_20525 at 4729.682 kb on + strand, within CA264_20525 at 4729.683 kb on - strand, within CA264_20525 at 4729.762 kb on - strand at 4729.845 kb on + strand at 4729.914 kb on + strand, within CA264_20530 at 4729.915 kb on - strand, within CA264_20530 at 4729.977 kb on - strand, within CA264_20530 at 4730.005 kb on + strand, within CA264_20530 at 4730.061 kb on + strand, within CA264_20530 at 4730.061 kb on + strand, within CA264_20530 at 4730.269 kb on - strand, within CA264_20530 at 4730.269 kb on - strand, within CA264_20530 at 4730.270 kb on + strand, within CA264_20530 at 4730.306 kb on - strand, within CA264_20530 at 4730.311 kb on + strand, within CA264_20530 at 4730.346 kb on - strand, within CA264_20530 at 4730.488 kb on + strand, within CA264_20530 at 4730.715 kb on + strand at 4730.716 kb on - strand at 4730.729 kb on + strand at 4730.730 kb on - strand at 4730.790 kb on - strand, within CA264_20535 at 4731.082 kb on - strand, within CA264_20535 at 4731.094 kb on - strand, within CA264_20535 at 4731.131 kb on + strand, within CA264_20535 at 4731.133 kb on + strand, within CA264_20535 at 4731.133 kb on + strand, within CA264_20535 at 4731.134 kb on - strand, within CA264_20535 at 4731.157 kb on + strand, within CA264_20535 at 4731.276 kb on + strand at 4731.278 kb on + strand at 4731.339 kb on - strand at 4731.339 kb on - strand at 4731.394 kb on + strand at 4731.542 kb on - strand at 4731.559 kb on + strand at 4731.559 kb on + strand at 4731.559 kb on + strand at 4731.560 kb on - strand at 4731.571 kb on + strand at 4731.572 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 4,728,811 - -1.2 4,728,841 + -0.0 4,728,841 + -0.9 4,728,841 + -0.4 4,728,841 + -0.5 4,728,842 - -1.8 4,728,842 - +0.3 4,728,842 - -2.3 4,728,843 + -2.6 4,728,843 + -1.9 4,728,843 + -0.2 4,728,844 - -0.4 4,728,852 - -0.1 4,728,920 - -1.4 4,729,064 + CA264_20525 0.22 -0.9 4,729,065 - CA264_20525 0.22 -0.8 4,729,096 + CA264_20525 0.25 -0.0 4,729,119 - CA264_20525 0.28 -0.7 4,729,291 + CA264_20525 0.47 -0.8 4,729,308 - CA264_20525 0.48 -1.9 4,729,308 - CA264_20525 0.48 -1.0 4,729,308 - CA264_20525 0.48 -1.2 4,729,308 - CA264_20525 0.48 -1.2 4,729,308 - CA264_20525 0.48 -0.4 4,729,382 + CA264_20525 0.57 -1.2 4,729,410 - CA264_20525 0.60 -1.0 4,729,468 + CA264_20525 0.66 -1.8 4,729,556 + CA264_20525 0.76 -1.8 4,729,556 + CA264_20525 0.76 -1.3 4,729,569 - CA264_20525 0.77 -2.3 4,729,578 + CA264_20525 0.78 -0.9 4,729,603 + CA264_20525 0.81 -0.9 4,729,604 - CA264_20525 0.81 -1.1 4,729,682 + CA264_20525 0.90 +0.1 4,729,683 - CA264_20525 0.90 -0.2 4,729,762 - -0.8 4,729,845 + -2.3 4,729,914 + CA264_20530 0.13 -1.5 4,729,915 - CA264_20530 0.13 -0.1 4,729,977 - CA264_20530 0.20 -0.5 4,730,005 + CA264_20530 0.23 -0.4 4,730,061 + CA264_20530 0.29 +0.1 4,730,061 + CA264_20530 0.29 -0.7 4,730,269 - CA264_20530 0.53 -1.2 4,730,269 - CA264_20530 0.53 -1.9 4,730,270 + CA264_20530 0.53 +0.8 4,730,306 - CA264_20530 0.57 -1.6 4,730,311 + CA264_20530 0.58 -1.4 4,730,346 - CA264_20530 0.61 -0.9 4,730,488 + CA264_20530 0.77 -0.1 4,730,715 + -2.1 4,730,716 - -0.5 4,730,729 + -2.4 4,730,730 - -1.0 4,730,790 - CA264_20535 0.11 +0.3 4,731,082 - CA264_20535 0.69 -0.5 4,731,094 - CA264_20535 0.71 -1.5 4,731,131 + CA264_20535 0.78 -3.5 4,731,133 + CA264_20535 0.79 -3.8 4,731,133 + CA264_20535 0.79 -1.0 4,731,134 - CA264_20535 0.79 -1.1 4,731,157 + CA264_20535 0.84 -4.1 4,731,276 + -1.3 4,731,278 + -3.2 4,731,339 - -1.7 4,731,339 - -1.2 4,731,394 + -0.9 4,731,542 - -0.2 4,731,559 + +0.8 4,731,559 + +1.4 4,731,559 + +1.3 4,731,560 - +0.3 4,731,571 + +0.2 4,731,572 - +0.1
Or see this region's nucleotide sequence