Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19930

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19920 and CA264_19925 are separated by 305 nucleotidesCA264_19925 and CA264_19930 are separated by 2 nucleotidesCA264_19930 and CA264_19935 are separated by 155 nucleotides CA264_19920: CA264_19920 - alanine glycine permease, at 4,593,234 to 4,594,793 _19920 CA264_19925: CA264_19925 - peptidyl-prolyl cis-trans isomerase, at 4,595,099 to 4,595,749 _19925 CA264_19930: CA264_19930 - NAD(P)-dependent oxidoreductase, at 4,595,752 to 4,596,663 _19930 CA264_19935: CA264_19935 - sodium:calcium symporter, at 4,596,819 to 4,598,471 _19935 Position (kb) 4595 4596 4597Strain fitness (log2 ratio) -3 -2 -1 0 1at 4594.777 kb on - strandat 4594.795 kb on + strandat 4594.796 kb on - strandat 4594.796 kb on - strandat 4594.804 kb on + strandat 4594.805 kb on - strandat 4594.805 kb on - strandat 4594.961 kb on + strandat 4595.090 kb on + strandat 4595.090 kb on + strandat 4595.090 kb on + strandat 4595.090 kb on + strandat 4595.091 kb on - strandat 4595.091 kb on - strandat 4595.091 kb on - strandat 4595.094 kb on + strandat 4595.094 kb on + strandat 4595.094 kb on + strandat 4595.095 kb on - strandat 4595.095 kb on - strandat 4595.095 kb on - strandat 4595.098 kb on + strandat 4595.099 kb on - strandat 4595.116 kb on + strandat 4595.196 kb on + strand, within CA264_19925at 4595.196 kb on + strand, within CA264_19925at 4595.196 kb on + strand, within CA264_19925at 4595.197 kb on - strand, within CA264_19925at 4595.516 kb on + strand, within CA264_19925at 4595.517 kb on - strand, within CA264_19925at 4595.561 kb on + strand, within CA264_19925at 4595.561 kb on + strand, within CA264_19925at 4595.561 kb on + strand, within CA264_19925at 4595.562 kb on - strand, within CA264_19925at 4595.562 kb on - strand, within CA264_19925at 4595.583 kb on + strand, within CA264_19925at 4595.584 kb on - strand, within CA264_19925at 4595.584 kb on - strand, within CA264_19925at 4595.605 kb on + strand, within CA264_19925at 4595.605 kb on + strand, within CA264_19925at 4595.606 kb on - strand, within CA264_19925at 4595.606 kb on - strand, within CA264_19925at 4595.708 kb on + strandat 4595.708 kb on + strandat 4595.715 kb on - strandat 4595.716 kb on + strandat 4595.716 kb on + strandat 4595.717 kb on - strandat 4595.717 kb on - strandat 4595.720 kb on + strandat 4595.747 kb on + strandat 4595.748 kb on - strandat 4596.661 kb on + strandat 4596.661 kb on + strandat 4596.662 kb on - strandat 4596.682 kb on + strandat 4596.736 kb on + strandat 4596.737 kb on - strandat 4596.737 kb on - strandat 4596.740 kb on + strandat 4596.740 kb on + strandat 4596.776 kb on + strandat 4596.776 kb on + strandat 4596.776 kb on + strandat 4596.776 kb on + strandat 4596.777 kb on - strandat 4596.777 kb on - strandat 4596.777 kb on - strandat 4596.779 kb on + strandat 4596.779 kb on + strandat 4596.779 kb on + strandat 4596.779 kb on + strandat 4596.784 kb on + strandat 4596.784 kb on + strandat 4596.785 kb on - strandat 4596.790 kb on - strandat 4596.794 kb on - strandat 4596.886 kb on + strandat 4596.887 kb on - strandat 4596.925 kb on + strandat 4597.093 kb on - strand, within CA264_19935at 4597.138 kb on - strand, within CA264_19935at 4597.170 kb on + strand, within CA264_19935at 4597.170 kb on + strand, within CA264_19935at 4597.242 kb on + strand, within CA264_19935at 4597.587 kb on + strand, within CA264_19935at 4597.596 kb on + strand, within CA264_19935at 4597.597 kb on - strand, within CA264_19935

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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4,594,777 - -1.2
4,594,795 + -1.7
4,594,796 - +0.6
4,594,796 - -2.5
4,594,804 + +0.0
4,594,805 - -1.5
4,594,805 - -0.2
4,594,961 + -0.2
4,595,090 + -0.4
4,595,090 + -0.7
4,595,090 + -2.2
4,595,090 + -1.1
4,595,091 - -1.0
4,595,091 - +0.0
4,595,091 - -1.0
4,595,094 + -1.1
4,595,094 + -0.1
4,595,094 + -0.9
4,595,095 - +1.7
4,595,095 - +1.1
4,595,095 - -0.8
4,595,098 + -2.2
4,595,099 - -1.9
4,595,116 + -0.1
4,595,196 + CA264_19925 0.15 -0.2
4,595,196 + CA264_19925 0.15 -1.4
4,595,196 + CA264_19925 0.15 -1.3
4,595,197 - CA264_19925 0.15 -0.6
4,595,516 + CA264_19925 0.64 -0.9
4,595,517 - CA264_19925 0.64 -0.8
4,595,561 + CA264_19925 0.71 -0.7
4,595,561 + CA264_19925 0.71 -1.1
4,595,561 + CA264_19925 0.71 -2.4
4,595,562 - CA264_19925 0.71 -1.3
4,595,562 - CA264_19925 0.71 -0.3
4,595,583 + CA264_19925 0.74 -3.6
4,595,584 - CA264_19925 0.75 -1.7
4,595,584 - CA264_19925 0.75 -2.1
4,595,605 + CA264_19925 0.78 -1.0
4,595,605 + CA264_19925 0.78 -2.1
4,595,606 - CA264_19925 0.78 -0.0
4,595,606 - CA264_19925 0.78 +1.4
4,595,708 + -2.1
4,595,708 + -1.4
4,595,715 - -1.1
4,595,716 + +0.1
4,595,716 + -1.2
4,595,717 - -1.8
4,595,717 - -0.8
4,595,720 + -0.8
4,595,747 + -1.3
4,595,748 - -0.5
4,596,661 + -1.1
4,596,661 + -2.7
4,596,662 - -0.7
4,596,682 + -1.0
4,596,736 + +0.3
4,596,737 - -1.9
4,596,737 - -0.8
4,596,740 + -0.9
4,596,740 + -2.3
4,596,776 + -1.7
4,596,776 + -1.8
4,596,776 + -0.8
4,596,776 + -2.2
4,596,777 - -0.0
4,596,777 - -0.7
4,596,777 - +0.1
4,596,779 + -1.1
4,596,779 + -0.8
4,596,779 + -1.2
4,596,779 + -1.1
4,596,784 + -0.7
4,596,784 + -1.4
4,596,785 - -0.9
4,596,790 - -0.1
4,596,794 - -0.2
4,596,886 + +0.3
4,596,887 - -0.4
4,596,925 + -0.2
4,597,093 - CA264_19935 0.17 -0.1
4,597,138 - CA264_19935 0.19 +0.1
4,597,170 + CA264_19935 0.21 +0.7
4,597,170 + CA264_19935 0.21 +0.0
4,597,242 + CA264_19935 0.26 +0.0
4,597,587 + CA264_19935 0.46 +0.1
4,597,596 + CA264_19935 0.47 -0.1
4,597,597 - CA264_19935 0.47 -1.2

Or see this region's nucleotide sequence