Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19905

Experiment: m.b. A22 0.04 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_19895 and CA264_19900 are separated by 191 nucleotidesCA264_19900 and CA264_19905 are separated by 78 nucleotidesCA264_19905 and CA264_19910 are separated by 127 nucleotides CA264_19895: CA264_19895 - phosphoribosyltransferase, at 4,588,547 to 4,589,062 _19895 CA264_19900: CA264_19900 - 50S ribosomal protein L31, at 4,589,254 to 4,589,499 _19900 CA264_19905: CA264_19905 - glucose-1-phosphate thymidylyltransferase, at 4,589,578 to 4,590,783 _19905 CA264_19910: CA264_19910 - DNA polymerase III subunit delta, at 4,590,911 to 4,592,035 _19910 Position (kb) 4589 4590 4591Strain fitness (log2 ratio) -2 -1 0 1at 4588.633 kb on - strand, within CA264_19895at 4588.651 kb on - strand, within CA264_19895at 4588.728 kb on + strand, within CA264_19895at 4588.790 kb on - strand, within CA264_19895at 4588.795 kb on + strand, within CA264_19895at 4588.796 kb on - strand, within CA264_19895at 4588.889 kb on + strand, within CA264_19895at 4588.890 kb on - strand, within CA264_19895at 4589.062 kb on + strandat 4589.063 kb on - strandat 4589.063 kb on - strandat 4589.063 kb on - strandat 4589.066 kb on + strandat 4589.067 kb on - strandat 4589.097 kb on - strandat 4589.099 kb on - strandat 4589.128 kb on - strandat 4589.155 kb on - strandat 4589.577 kb on + strandat 4589.577 kb on + strandat 4590.758 kb on - strandat 4590.772 kb on - strandat 4590.782 kb on - strandat 4590.792 kb on - strandat 4590.861 kb on + strandat 4590.880 kb on - strandat 4590.892 kb on - strandat 4590.893 kb on + strandat 4590.894 kb on - strandat 4590.901 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
remove
4,588,633 - CA264_19895 0.17 -0.3
4,588,651 - CA264_19895 0.20 +0.9
4,588,728 + CA264_19895 0.35 +0.6
4,588,790 - CA264_19895 0.47 -0.3
4,588,795 + CA264_19895 0.48 +0.4
4,588,796 - CA264_19895 0.48 +0.2
4,588,889 + CA264_19895 0.66 -0.2
4,588,890 - CA264_19895 0.66 +0.3
4,589,062 + -2.3
4,589,063 - +0.1
4,589,063 - +0.2
4,589,063 - +0.4
4,589,066 + -0.2
4,589,067 - +0.2
4,589,097 - -0.2
4,589,099 - +0.9
4,589,128 - -0.3
4,589,155 - -0.6
4,589,577 + +1.6
4,589,577 + +0.3
4,590,758 - -0.5
4,590,772 - -1.7
4,590,782 - -0.4
4,590,792 - -0.8
4,590,861 + +0.1
4,590,880 - +0.4
4,590,892 - -0.4
4,590,893 + +0.6
4,590,894 - -0.2
4,590,901 - +0.0

Or see this region's nucleotide sequence