Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19605 and CA264_19610 are separated by 36 nucleotides CA264_19610 and CA264_19615 are separated by 193 nucleotides CA264_19615 and CA264_19620 are separated by 112 nucleotides CA264_19620 and CA264_19625 are separated by 19 nucleotides
CA264_19605: CA264_19605 - RNA polymerase, at 4,530,161 to 4,530,718
_19605
CA264_19610: CA264_19610 - hypothetical protein, at 4,530,755 to 4,531,387
_19610
CA264_19615: CA264_19615 - hypothetical protein, at 4,531,581 to 4,532,540
_19615
CA264_19620: CA264_19620 - 2-aminomuconate deaminase, at 4,532,653 to 4,533,081
_19620
CA264_19625: CA264_19625 - DNA mismatch repair protein MutS, at 4,533,101 to 4,534,915
_19625
Position (kb) 4531
4532
4533 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4530.584 kb on + strand, within CA264_19605 at 4530.584 kb on + strand, within CA264_19605 at 4530.729 kb on + strand at 4530.736 kb on + strand at 4530.745 kb on + strand at 4530.745 kb on + strand at 4530.748 kb on + strand at 4530.748 kb on + strand at 4530.748 kb on + strand at 4530.748 kb on + strand at 4530.748 kb on + strand at 4530.749 kb on - strand at 4530.859 kb on + strand, within CA264_19610 at 4531.336 kb on - strand at 4531.348 kb on + strand at 4531.349 kb on - strand at 4531.349 kb on - strand at 4531.352 kb on - strand at 4531.360 kb on + strand at 4531.360 kb on + strand at 4531.591 kb on + strand at 4531.591 kb on + strand at 4531.831 kb on + strand, within CA264_19615 at 4531.944 kb on + strand, within CA264_19615 at 4531.954 kb on - strand, within CA264_19615 at 4532.005 kb on - strand, within CA264_19615 at 4532.124 kb on + strand, within CA264_19615 at 4532.259 kb on + strand, within CA264_19615 at 4532.374 kb on + strand, within CA264_19615 at 4532.442 kb on + strand, within CA264_19615 at 4532.444 kb on + strand, within CA264_19615 at 4532.531 kb on + strand at 4532.552 kb on + strand at 4532.559 kb on - strand at 4532.643 kb on - strand at 4532.672 kb on + strand at 4532.828 kb on - strand, within CA264_19620 at 4532.920 kb on - strand, within CA264_19620 at 4532.959 kb on + strand, within CA264_19620 at 4532.972 kb on - strand, within CA264_19620 at 4532.980 kb on + strand, within CA264_19620 at 4533.014 kb on + strand, within CA264_19620 at 4533.014 kb on + strand, within CA264_19620 at 4533.020 kb on + strand, within CA264_19620 at 4533.080 kb on - strand at 4533.080 kb on - strand at 4533.085 kb on - strand at 4533.096 kb on - strand at 4533.124 kb on - strand at 4533.236 kb on + strand at 4533.239 kb on + strand at 4533.340 kb on + strand, within CA264_19625 at 4533.345 kb on - strand, within CA264_19625 at 4533.396 kb on + strand, within CA264_19625 at 4533.439 kb on - strand, within CA264_19625 at 4533.472 kb on + strand, within CA264_19625 at 4533.540 kb on + strand, within CA264_19625
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 4,530,584 + CA264_19605 0.76 +0.1 4,530,584 + CA264_19605 0.76 +0.7 4,530,729 + +0.1 4,530,736 + +0.7 4,530,745 + +0.1 4,530,745 + +0.4 4,530,748 + -0.3 4,530,748 + -0.3 4,530,748 + -0.7 4,530,748 + -0.6 4,530,748 + -0.5 4,530,749 - -1.3 4,530,859 + CA264_19610 0.16 -0.5 4,531,336 - -0.4 4,531,348 + -1.0 4,531,349 - -0.1 4,531,349 - +0.1 4,531,352 - -0.5 4,531,360 + +0.1 4,531,360 + +0.2 4,531,591 + -3.9 4,531,591 + -0.5 4,531,831 + CA264_19615 0.26 -2.0 4,531,944 + CA264_19615 0.38 -0.6 4,531,954 - CA264_19615 0.39 -1.2 4,532,005 - CA264_19615 0.44 -1.5 4,532,124 + CA264_19615 0.57 -0.9 4,532,259 + CA264_19615 0.71 -1.4 4,532,374 + CA264_19615 0.83 -1.5 4,532,442 + CA264_19615 0.90 -1.0 4,532,444 + CA264_19615 0.90 -1.5 4,532,531 + -1.4 4,532,552 + +0.7 4,532,559 - -0.7 4,532,643 - -1.5 4,532,672 + -2.0 4,532,828 - CA264_19620 0.41 -0.7 4,532,920 - CA264_19620 0.62 -1.0 4,532,959 + CA264_19620 0.71 -1.6 4,532,972 - CA264_19620 0.74 -0.7 4,532,980 + CA264_19620 0.76 -4.0 4,533,014 + CA264_19620 0.84 -2.3 4,533,014 + CA264_19620 0.84 -0.9 4,533,020 + CA264_19620 0.86 -1.2 4,533,080 - -0.4 4,533,080 - -1.5 4,533,085 - -0.1 4,533,096 - -0.3 4,533,124 - -1.1 4,533,236 + -1.4 4,533,239 + -1.2 4,533,340 + CA264_19625 0.13 -1.8 4,533,345 - CA264_19625 0.13 -0.8 4,533,396 + CA264_19625 0.16 -1.9 4,533,439 - CA264_19625 0.19 -1.0 4,533,472 + CA264_19625 0.20 -0.6 4,533,540 + CA264_19625 0.24 -0.3
Or see this region's nucleotide sequence