Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18995

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18990 and CA264_18995 are separated by 234 nucleotidesCA264_18995 and CA264_19000 are separated by 118 nucleotides CA264_18990: CA264_18990 - hypothetical protein, at 4,408,259 to 4,409,707 _18990 CA264_18995: CA264_18995 - amidase, at 4,409,942 to 4,411,615 _18995 CA264_19000: CA264_19000 - S9 family peptidase, at 4,411,734 to 4,414,139 _19000 Position (kb) 4409 4410 4411 4412Strain fitness (log2 ratio) -2 -1 0 1at 4408.945 kb on + strand, within CA264_18990at 4408.954 kb on + strand, within CA264_18990at 4408.955 kb on - strand, within CA264_18990at 4408.957 kb on + strand, within CA264_18990at 4408.957 kb on + strand, within CA264_18990at 4408.958 kb on - strand, within CA264_18990at 4408.961 kb on - strand, within CA264_18990at 4409.023 kb on - strand, within CA264_18990at 4409.038 kb on + strand, within CA264_18990at 4409.043 kb on - strand, within CA264_18990at 4409.043 kb on - strand, within CA264_18990at 4409.059 kb on + strand, within CA264_18990at 4409.103 kb on + strand, within CA264_18990at 4409.109 kb on + strand, within CA264_18990at 4409.132 kb on - strand, within CA264_18990at 4409.207 kb on - strand, within CA264_18990at 4409.287 kb on - strand, within CA264_18990at 4409.287 kb on - strand, within CA264_18990at 4409.287 kb on - strand, within CA264_18990at 4409.384 kb on - strand, within CA264_18990at 4409.397 kb on + strand, within CA264_18990at 4409.398 kb on - strand, within CA264_18990at 4409.439 kb on - strand, within CA264_18990at 4409.497 kb on + strand, within CA264_18990at 4409.531 kb on - strand, within CA264_18990at 4409.580 kb on + strandat 4409.581 kb on - strandat 4409.581 kb on - strandat 4409.608 kb on + strandat 4409.612 kb on + strandat 4409.617 kb on + strandat 4409.617 kb on + strandat 4409.618 kb on - strandat 4409.634 kb on + strandat 4409.634 kb on + strandat 4409.712 kb on + strandat 4409.776 kb on + strandat 4409.803 kb on + strandat 4409.817 kb on + strandat 4409.847 kb on - strandat 4409.847 kb on - strandat 4409.903 kb on + strandat 4409.912 kb on - strandat 4409.917 kb on - strandat 4409.917 kb on - strandat 4409.939 kb on + strandat 4409.940 kb on - strandat 4409.951 kb on - strandat 4410.019 kb on + strandat 4410.019 kb on + strandat 4410.061 kb on - strandat 4410.098 kb on - strandat 4410.098 kb on - strandat 4410.165 kb on + strand, within CA264_18995at 4410.178 kb on - strand, within CA264_18995at 4410.256 kb on - strand, within CA264_18995at 4410.380 kb on + strand, within CA264_18995at 4410.400 kb on + strand, within CA264_18995at 4410.401 kb on - strand, within CA264_18995at 4410.402 kb on + strand, within CA264_18995at 4410.403 kb on - strand, within CA264_18995at 4410.403 kb on - strand, within CA264_18995at 4410.474 kb on - strand, within CA264_18995at 4410.474 kb on - strand, within CA264_18995at 4410.475 kb on + strand, within CA264_18995at 4410.493 kb on + strand, within CA264_18995at 4410.533 kb on + strand, within CA264_18995at 4410.536 kb on - strand, within CA264_18995at 4410.536 kb on - strand, within CA264_18995at 4410.703 kb on + strand, within CA264_18995at 4410.704 kb on - strand, within CA264_18995at 4410.911 kb on - strand, within CA264_18995at 4410.987 kb on - strand, within CA264_18995at 4410.987 kb on - strand, within CA264_18995at 4411.005 kb on - strand, within CA264_18995at 4411.015 kb on + strand, within CA264_18995at 4411.294 kb on + strand, within CA264_18995at 4411.294 kb on + strand, within CA264_18995at 4411.310 kb on + strand, within CA264_18995at 4411.311 kb on - strand, within CA264_18995at 4411.339 kb on - strand, within CA264_18995at 4411.383 kb on - strand, within CA264_18995at 4411.383 kb on - strand, within CA264_18995at 4411.489 kb on + strandat 4411.492 kb on + strandat 4411.555 kb on + strandat 4411.557 kb on + strandat 4411.678 kb on - strandat 4411.679 kb on + strandat 4411.685 kb on - strandat 4411.721 kb on + strandat 4411.722 kb on - strandat 4411.731 kb on - strandat 4411.812 kb on - strandat 4411.908 kb on + strandat 4411.909 kb on - strandat 4411.957 kb on + strandat 4411.958 kb on - strandat 4412.034 kb on - strand, within CA264_19000at 4412.048 kb on + strand, within CA264_19000at 4412.085 kb on + strand, within CA264_19000at 4412.092 kb on + strand, within CA264_19000at 4412.092 kb on + strand, within CA264_19000at 4412.178 kb on + strand, within CA264_19000at 4412.466 kb on - strand, within CA264_19000at 4412.466 kb on - strand, within CA264_19000at 4412.466 kb on - strand, within CA264_19000at 4412.520 kb on + strand, within CA264_19000at 4412.520 kb on + strand, within CA264_19000at 4412.520 kb on + strand, within CA264_19000at 4412.521 kb on - strand, within CA264_19000at 4412.521 kb on - strand, within CA264_19000at 4412.521 kb on - strand, within CA264_19000at 4412.570 kb on - strand, within CA264_19000

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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4,408,945 + CA264_18990 0.47 +0.1
4,408,954 + CA264_18990 0.48 +0.1
4,408,955 - CA264_18990 0.48 -0.7
4,408,957 + CA264_18990 0.48 +0.2
4,408,957 + CA264_18990 0.48 +0.6
4,408,958 - CA264_18990 0.48 -0.8
4,408,961 - CA264_18990 0.48 -1.1
4,409,023 - CA264_18990 0.53 -0.2
4,409,038 + CA264_18990 0.54 +0.5
4,409,043 - CA264_18990 0.54 +0.0
4,409,043 - CA264_18990 0.54 -0.8
4,409,059 + CA264_18990 0.55 +1.4
4,409,103 + CA264_18990 0.58 -1.4
4,409,109 + CA264_18990 0.59 -0.2
4,409,132 - CA264_18990 0.60 -1.0
4,409,207 - CA264_18990 0.65 -0.8
4,409,287 - CA264_18990 0.71 -1.3
4,409,287 - CA264_18990 0.71 -2.0
4,409,287 - CA264_18990 0.71 -1.7
4,409,384 - CA264_18990 0.78 +0.7
4,409,397 + CA264_18990 0.79 +0.5
4,409,398 - CA264_18990 0.79 -0.2
4,409,439 - CA264_18990 0.81 -1.7
4,409,497 + CA264_18990 0.85 +0.2
4,409,531 - CA264_18990 0.88 -1.6
4,409,580 + -0.8
4,409,581 - -0.3
4,409,581 - +0.0
4,409,608 + -1.2
4,409,612 + +0.5
4,409,617 + +0.0
4,409,617 + +0.3
4,409,618 - +0.5
4,409,634 + -0.1
4,409,634 + +0.2
4,409,712 + -0.3
4,409,776 + -0.7
4,409,803 + -0.3
4,409,817 + +0.4
4,409,847 - -1.7
4,409,847 - +0.4
4,409,903 + +0.1
4,409,912 - -0.9
4,409,917 - -1.5
4,409,917 - +0.1
4,409,939 + -1.0
4,409,940 - +0.5
4,409,951 - -0.8
4,410,019 + +1.6
4,410,019 + -0.3
4,410,061 - -1.3
4,410,098 - +0.1
4,410,098 - +1.0
4,410,165 + CA264_18995 0.13 -0.3
4,410,178 - CA264_18995 0.14 -0.3
4,410,256 - CA264_18995 0.19 -1.1
4,410,380 + CA264_18995 0.26 -0.2
4,410,400 + CA264_18995 0.27 -0.1
4,410,401 - CA264_18995 0.27 +1.0
4,410,402 + CA264_18995 0.27 +1.5
4,410,403 - CA264_18995 0.28 -1.3
4,410,403 - CA264_18995 0.28 -1.4
4,410,474 - CA264_18995 0.32 -1.4
4,410,474 - CA264_18995 0.32 -0.2
4,410,475 + CA264_18995 0.32 -0.4
4,410,493 + CA264_18995 0.33 +0.0
4,410,533 + CA264_18995 0.35 -0.5
4,410,536 - CA264_18995 0.35 -0.8
4,410,536 - CA264_18995 0.35 -0.8
4,410,703 + CA264_18995 0.45 +0.6
4,410,704 - CA264_18995 0.46 -0.1
4,410,911 - CA264_18995 0.58 -1.3
4,410,987 - CA264_18995 0.62 -0.5
4,410,987 - CA264_18995 0.62 -0.5
4,411,005 - CA264_18995 0.64 -0.5
4,411,015 + CA264_18995 0.64 -0.8
4,411,294 + CA264_18995 0.81 -1.5
4,411,294 + CA264_18995 0.81 -1.0
4,411,310 + CA264_18995 0.82 -0.3
4,411,311 - CA264_18995 0.82 -1.0
4,411,339 - CA264_18995 0.83 -0.4
4,411,383 - CA264_18995 0.86 -0.7
4,411,383 - CA264_18995 0.86 -0.9
4,411,489 + -0.4
4,411,492 + +0.2
4,411,555 + +0.4
4,411,557 + -0.9
4,411,678 - -1.8
4,411,679 + -0.0
4,411,685 - -1.2
4,411,721 + +0.5
4,411,722 - +0.8
4,411,731 - +0.5
4,411,812 - -1.4
4,411,908 + -0.8
4,411,909 - +0.8
4,411,957 + -1.0
4,411,958 - -0.4
4,412,034 - CA264_19000 0.12 -1.0
4,412,048 + CA264_19000 0.13 -1.5
4,412,085 + CA264_19000 0.15 -0.4
4,412,092 + CA264_19000 0.15 -0.4
4,412,092 + CA264_19000 0.15 -0.5
4,412,178 + CA264_19000 0.18 -1.0
4,412,466 - CA264_19000 0.30 -0.5
4,412,466 - CA264_19000 0.30 -0.4
4,412,466 - CA264_19000 0.30 -0.3
4,412,520 + CA264_19000 0.33 -0.4
4,412,520 + CA264_19000 0.33 +0.0
4,412,520 + CA264_19000 0.33 +0.5
4,412,521 - CA264_19000 0.33 -0.8
4,412,521 - CA264_19000 0.33 -0.5
4,412,521 - CA264_19000 0.33 -0.4
4,412,570 - CA264_19000 0.35 -0.2

Or see this region's nucleotide sequence