Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18765

Experiment: m.b. A22 0.04 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_18760 and CA264_18765 are separated by 206 nucleotidesCA264_18765 and CA264_18770 are separated by 167 nucleotidesCA264_18770 and CA264_18775 are separated by 312 nucleotides CA264_18760: CA264_18760 - hypothetical protein, at 4,355,520 to 4,358,375 _18760 CA264_18765: CA264_18765 - ATPase, at 4,358,582 to 4,359,541 _18765 CA264_18770: CA264_18770 - hypothetical protein, at 4,359,709 to 4,360,143 _18770 CA264_18775: CA264_18775 - hypothetical protein, at 4,360,456 to 4,360,845 _18775 Position (kb) 4358 4359 4360Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4357.600 kb on - strand, within CA264_18760at 4357.623 kb on - strand, within CA264_18760at 4357.646 kb on + strand, within CA264_18760at 4357.647 kb on - strand, within CA264_18760at 4357.647 kb on - strand, within CA264_18760at 4357.647 kb on - strandat 4357.680 kb on - strand, within CA264_18760at 4357.758 kb on + strand, within CA264_18760at 4357.759 kb on - strand, within CA264_18760at 4357.759 kb on - strand, within CA264_18760at 4357.759 kb on - strand, within CA264_18760at 4357.759 kb on - strand, within CA264_18760at 4357.759 kb on - strand, within CA264_18760at 4357.762 kb on + strand, within CA264_18760at 4357.762 kb on + strand, within CA264_18760at 4357.763 kb on - strand, within CA264_18760at 4357.763 kb on - strand, within CA264_18760at 4357.763 kb on - strand, within CA264_18760at 4357.801 kb on + strand, within CA264_18760at 4357.802 kb on - strand, within CA264_18760at 4357.871 kb on - strand, within CA264_18760at 4357.873 kb on - strand, within CA264_18760at 4357.892 kb on + strand, within CA264_18760at 4357.928 kb on + strand, within CA264_18760at 4357.974 kb on - strand, within CA264_18760at 4357.976 kb on + strand, within CA264_18760at 4358.078 kb on - strand, within CA264_18760at 4358.178 kb on + strandat 4358.267 kb on + strandat 4358.267 kb on + strandat 4358.268 kb on - strandat 4358.295 kb on + strandat 4358.296 kb on - strandat 4358.296 kb on - strandat 4358.311 kb on - strandat 4358.316 kb on + strandat 4358.316 kb on + strandat 4358.316 kb on + strandat 4358.317 kb on - strandat 4358.317 kb on - strandat 4358.368 kb on + strandat 4358.369 kb on - strandat 4358.369 kb on - strandat 4358.373 kb on + strandat 4358.397 kb on + strandat 4358.439 kb on - strandat 4358.535 kb on - strandat 4358.556 kb on - strandat 4358.558 kb on - strandat 4358.575 kb on + strandat 4358.576 kb on - strandat 4358.576 kb on - strandat 4358.577 kb on + strandat 4358.578 kb on - strandat 4358.578 kb on - strandat 4358.578 kb on - strandat 4358.606 kb on + strandat 4358.607 kb on - strandat 4358.607 kb on - strandat 4358.615 kb on + strandat 4358.615 kb on + strandat 4358.655 kb on + strandat 4358.681 kb on + strand, within CA264_18765at 4358.689 kb on - strand, within CA264_18765at 4358.701 kb on + strand, within CA264_18765at 4358.702 kb on - strand, within CA264_18765at 4358.721 kb on + strand, within CA264_18765at 4358.721 kb on + strand, within CA264_18765at 4358.721 kb on + strand, within CA264_18765at 4358.740 kb on - strand, within CA264_18765at 4358.771 kb on + strand, within CA264_18765at 4358.773 kb on + strand, within CA264_18765at 4358.773 kb on + strand, within CA264_18765at 4358.773 kb on + strand, within CA264_18765at 4358.774 kb on - strand, within CA264_18765at 4358.774 kb on - strand, within CA264_18765at 4358.774 kb on - strand, within CA264_18765at 4358.806 kb on - strand, within CA264_18765at 4358.806 kb on - strand, within CA264_18765at 4358.806 kb on - strand, within CA264_18765at 4358.806 kb on - strand, within CA264_18765at 4358.864 kb on + strand, within CA264_18765at 4358.865 kb on - strand, within CA264_18765at 4358.866 kb on + strand, within CA264_18765at 4358.866 kb on + strand, within CA264_18765at 4358.867 kb on - strand, within CA264_18765at 4358.867 kb on - strand, within CA264_18765at 4358.869 kb on + strand, within CA264_18765at 4358.869 kb on + strand, within CA264_18765at 4358.870 kb on - strand, within CA264_18765at 4358.870 kb on - strand, within CA264_18765at 4358.871 kb on + strand, within CA264_18765at 4358.871 kb on + strand, within CA264_18765at 4358.872 kb on - strand, within CA264_18765at 4359.030 kb on + strand, within CA264_18765at 4359.030 kb on + strand, within CA264_18765at 4359.031 kb on - strand, within CA264_18765at 4359.044 kb on - strand, within CA264_18765at 4359.138 kb on + strand, within CA264_18765at 4359.139 kb on - strand, within CA264_18765at 4359.139 kb on - strand, within CA264_18765at 4359.233 kb on + strand, within CA264_18765at 4359.292 kb on - strand, within CA264_18765at 4359.292 kb on - strand, within CA264_18765at 4359.292 kb on - strand, within CA264_18765at 4359.292 kb on - strand, within CA264_18765at 4359.471 kb on + strandat 4359.472 kb on - strandat 4359.497 kb on + strandat 4359.506 kb on - strandat 4359.506 kb on - strandat 4359.509 kb on + strandat 4359.510 kb on - strandat 4359.531 kb on + strandat 4359.604 kb on + strandat 4359.605 kb on - strandat 4359.612 kb on + strandat 4359.612 kb on + strandat 4359.612 kb on + strandat 4359.613 kb on - strandat 4359.613 kb on - strandat 4359.615 kb on + strandat 4359.615 kb on + strandat 4359.623 kb on + strandat 4359.652 kb on + strandat 4360.015 kb on + strand, within CA264_18770at 4360.030 kb on - strand, within CA264_18770at 4360.127 kb on - strandat 4360.183 kb on + strandat 4360.184 kb on - strandat 4360.187 kb on - strandat 4360.226 kb on + strandat 4360.226 kb on + strandat 4360.244 kb on + strandat 4360.275 kb on + strandat 4360.318 kb on - strandat 4360.469 kb on + strandat 4360.469 kb on + strandat 4360.539 kb on - strand, within CA264_18775

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
remove
4,357,600 - CA264_18760 0.73 -1.2
4,357,623 - CA264_18760 0.74 -0.7
4,357,646 + CA264_18760 0.74 +0.2
4,357,647 - CA264_18760 0.74 -1.2
4,357,647 - CA264_18760 0.74 +0.5
4,357,647 - +1.0
4,357,680 - CA264_18760 0.76 -0.2
4,357,758 + CA264_18760 0.78 -0.2
4,357,759 - CA264_18760 0.78 -0.7
4,357,759 - CA264_18760 0.78 -0.3
4,357,759 - CA264_18760 0.78 -0.9
4,357,759 - CA264_18760 0.78 +0.5
4,357,759 - CA264_18760 0.78 +1.8
4,357,762 + CA264_18760 0.79 +0.5
4,357,762 + CA264_18760 0.79 +0.4
4,357,763 - CA264_18760 0.79 -0.1
4,357,763 - CA264_18760 0.79 -1.1
4,357,763 - CA264_18760 0.79 -0.1
4,357,801 + CA264_18760 0.80 +1.0
4,357,802 - CA264_18760 0.80 -0.3
4,357,871 - CA264_18760 0.82 -0.2
4,357,873 - CA264_18760 0.82 +0.7
4,357,892 + CA264_18760 0.83 +0.8
4,357,928 + CA264_18760 0.84 +0.7
4,357,974 - CA264_18760 0.86 -0.7
4,357,976 + CA264_18760 0.86 +0.8
4,358,078 - CA264_18760 0.90 -0.1
4,358,178 + +0.6
4,358,267 + +0.0
4,358,267 + +1.0
4,358,268 - -0.9
4,358,295 + +0.3
4,358,296 - +0.3
4,358,296 - -0.8
4,358,311 - -0.5
4,358,316 + +0.8
4,358,316 + +0.8
4,358,316 + +0.7
4,358,317 - -0.4
4,358,317 - -0.4
4,358,368 + +1.3
4,358,369 - -0.3
4,358,369 - -0.2
4,358,373 + +0.6
4,358,397 + -0.3
4,358,439 - -0.2
4,358,535 - -0.1
4,358,556 - +1.0
4,358,558 - +0.9
4,358,575 + -1.0
4,358,576 - -0.1
4,358,576 - +1.2
4,358,577 + +3.6
4,358,578 - +0.2
4,358,578 - +0.7
4,358,578 - +0.6
4,358,606 + -1.9
4,358,607 - -1.0
4,358,607 - -0.8
4,358,615 + -1.9
4,358,615 + -2.5
4,358,655 + -1.2
4,358,681 + CA264_18765 0.10 -2.7
4,358,689 - CA264_18765 0.11 -0.7
4,358,701 + CA264_18765 0.12 -1.5
4,358,702 - CA264_18765 0.12 -1.3
4,358,721 + CA264_18765 0.14 -0.6
4,358,721 + CA264_18765 0.14 -1.1
4,358,721 + CA264_18765 0.14 -0.3
4,358,740 - CA264_18765 0.16 -0.9
4,358,771 + CA264_18765 0.20 -0.5
4,358,773 + CA264_18765 0.20 -1.5
4,358,773 + CA264_18765 0.20 -0.3
4,358,773 + CA264_18765 0.20 -1.9
4,358,774 - CA264_18765 0.20 -0.6
4,358,774 - CA264_18765 0.20 -0.5
4,358,774 - CA264_18765 0.20 -1.4
4,358,806 - CA264_18765 0.23 +0.0
4,358,806 - CA264_18765 0.23 -1.4
4,358,806 - CA264_18765 0.23 -0.9
4,358,806 - CA264_18765 0.23 -1.7
4,358,864 + CA264_18765 0.29 +1.0
4,358,865 - CA264_18765 0.29 -0.7
4,358,866 + CA264_18765 0.30 -0.3
4,358,866 + CA264_18765 0.30 -1.9
4,358,867 - CA264_18765 0.30 -0.6
4,358,867 - CA264_18765 0.30 -0.8
4,358,869 + CA264_18765 0.30 +0.8
4,358,869 + CA264_18765 0.30 -1.9
4,358,870 - CA264_18765 0.30 -0.1
4,358,870 - CA264_18765 0.30 -1.8
4,358,871 + CA264_18765 0.30 -2.1
4,358,871 + CA264_18765 0.30 -1.6
4,358,872 - CA264_18765 0.30 -1.0
4,359,030 + CA264_18765 0.47 -2.2
4,359,030 + CA264_18765 0.47 -1.3
4,359,031 - CA264_18765 0.47 -0.7
4,359,044 - CA264_18765 0.48 -1.6
4,359,138 + CA264_18765 0.58 -2.5
4,359,139 - CA264_18765 0.58 -1.1
4,359,139 - CA264_18765 0.58 -0.4
4,359,233 + CA264_18765 0.68 -1.8
4,359,292 - CA264_18765 0.74 -1.6
4,359,292 - CA264_18765 0.74 -1.0
4,359,292 - CA264_18765 0.74 -1.2
4,359,292 - CA264_18765 0.74 -0.1
4,359,471 + -1.1
4,359,472 - -0.9
4,359,497 + -2.0
4,359,506 - -0.7
4,359,506 - -3.2
4,359,509 + +2.0
4,359,510 - -1.9
4,359,531 + -1.1
4,359,604 + -0.3
4,359,605 - +0.1
4,359,612 + -0.4
4,359,612 + -1.0
4,359,612 + -0.4
4,359,613 - +0.7
4,359,613 - +0.2
4,359,615 + +0.1
4,359,615 + +0.9
4,359,623 + +0.6
4,359,652 + -0.7
4,360,015 + CA264_18770 0.70 +0.4
4,360,030 - CA264_18770 0.74 -0.3
4,360,127 - -0.8
4,360,183 + +0.0
4,360,184 - -1.0
4,360,187 - -0.8
4,360,226 + +0.1
4,360,226 + +0.0
4,360,244 + +0.5
4,360,275 + +0.6
4,360,318 - -1.8
4,360,469 + -1.0
4,360,469 + -0.4
4,360,539 - CA264_18775 0.21 +0.4

Or see this region's nucleotide sequence