Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18705

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18700 and CA264_18705 are separated by 93 nucleotidesCA264_18705 and CA264_18710 are separated by 169 nucleotidesCA264_18710 and CA264_18715 overlap by 8 nucleotides CA264_18700: CA264_18700 - cytochrome C biogenesis protein, at 4,342,488 to 4,345,085 _18700 CA264_18705: CA264_18705 - cytochrome C biogenesis protein, at 4,345,179 to 4,345,604 _18705 CA264_18710: CA264_18710 - hypothetical protein, at 4,345,774 to 4,346,034 _18710 CA264_18715: CA264_18715 - ABC transporter permease, at 4,346,027 to 4,346,692 _18715 Position (kb) 4345 4346Strain fitness (log2 ratio) -2 -1 0 1at 4345.180 kb on + strandat 4345.615 kb on + strandat 4345.624 kb on + strandat 4345.631 kb on - strandat 4345.631 kb on - strandat 4345.631 kb on - strandat 4345.643 kb on + strandat 4345.749 kb on + strandat 4345.755 kb on + strandat 4345.755 kb on + strandat 4345.757 kb on + strandat 4346.043 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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4,345,180 + -1.1
4,345,615 + -1.5
4,345,624 + -0.7
4,345,631 - +0.3
4,345,631 - -0.4
4,345,631 - +0.1
4,345,643 + -0.4
4,345,749 + -0.7
4,345,755 + -0.9
4,345,755 + -1.9
4,345,757 + +1.4
4,346,043 - -0.4

Or see this region's nucleotide sequence