Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18320

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18315 and CA264_18320 are separated by 91 nucleotidesCA264_18320 and CA264_18325 are separated by 52 nucleotidesCA264_18325 and CA264_18330 are separated by 169 nucleotides CA264_18315: CA264_18315 - alkene reductase, at 4,258,804 to 4,259,907 _18315 CA264_18320: CA264_18320 - 2,5-didehydrogluconate reductase, at 4,259,999 to 4,260,817 _18320 CA264_18325: CA264_18325 - MarR family transcriptional regulator, at 4,260,870 to 4,261,319 _18325 CA264_18330: CA264_18330 - hypothetical protein, at 4,261,489 to 4,261,938 _18330 Position (kb) 4259 4260 4261Strain fitness (log2 ratio) -1 0 1at 4259.004 kb on + strand, within CA264_18315at 4259.036 kb on + strand, within CA264_18315at 4259.036 kb on + strand, within CA264_18315at 4259.089 kb on + strand, within CA264_18315at 4259.089 kb on + strand, within CA264_18315at 4259.090 kb on - strand, within CA264_18315at 4259.090 kb on - strand, within CA264_18315at 4259.157 kb on - strand, within CA264_18315at 4259.251 kb on + strand, within CA264_18315at 4259.334 kb on + strand, within CA264_18315at 4259.335 kb on - strand, within CA264_18315at 4259.335 kb on - strand, within CA264_18315at 4259.383 kb on + strand, within CA264_18315at 4259.455 kb on - strand, within CA264_18315at 4259.455 kb on - strand, within CA264_18315at 4259.458 kb on - strand, within CA264_18315at 4259.497 kb on - strand, within CA264_18315at 4259.513 kb on + strand, within CA264_18315at 4259.611 kb on - strand, within CA264_18315at 4259.614 kb on + strand, within CA264_18315at 4259.682 kb on - strand, within CA264_18315at 4259.700 kb on + strand, within CA264_18315at 4259.700 kb on + strand, within CA264_18315at 4259.700 kb on + strand, within CA264_18315at 4259.701 kb on - strand, within CA264_18315at 4259.701 kb on - strand, within CA264_18315at 4259.702 kb on + strand, within CA264_18315at 4259.703 kb on - strand, within CA264_18315at 4259.707 kb on + strand, within CA264_18315at 4259.708 kb on - strand, within CA264_18315at 4259.708 kb on - strand, within CA264_18315at 4259.708 kb on - strand, within CA264_18315at 4259.708 kb on - strand, within CA264_18315at 4259.742 kb on + strand, within CA264_18315at 4259.742 kb on + strand, within CA264_18315at 4259.772 kb on - strand, within CA264_18315at 4259.774 kb on + strand, within CA264_18315at 4259.845 kb on - strandat 4259.887 kb on + strandat 4259.887 kb on + strandat 4259.888 kb on - strandat 4259.890 kb on + strandat 4259.891 kb on - strandat 4259.891 kb on - strandat 4259.970 kb on - strandat 4260.062 kb on + strandat 4260.062 kb on + strandat 4260.155 kb on + strand, within CA264_18320at 4260.211 kb on - strand, within CA264_18320at 4260.306 kb on + strand, within CA264_18320at 4260.306 kb on + strand, within CA264_18320at 4260.312 kb on + strand, within CA264_18320at 4260.342 kb on + strand, within CA264_18320at 4260.435 kb on + strand, within CA264_18320at 4260.471 kb on + strand, within CA264_18320at 4260.471 kb on + strand, within CA264_18320at 4260.472 kb on - strand, within CA264_18320at 4260.472 kb on - strand, within CA264_18320at 4260.599 kb on + strand, within CA264_18320at 4260.678 kb on + strand, within CA264_18320at 4260.678 kb on + strand, within CA264_18320at 4260.678 kb on + strand, within CA264_18320at 4260.691 kb on + strand, within CA264_18320at 4260.696 kb on - strand, within CA264_18320at 4260.728 kb on + strand, within CA264_18320at 4260.728 kb on + strand, within CA264_18320at 4260.739 kb on - strandat 4261.299 kb on + strandat 4261.312 kb on - strandat 4261.334 kb on - strandat 4261.399 kb on - strandat 4261.399 kb on - strandat 4261.399 kb on - strandat 4261.402 kb on + strandat 4261.403 kb on - strandat 4261.404 kb on + strandat 4261.422 kb on - strandat 4261.467 kb on + strandat 4261.574 kb on - strand, within CA264_18330at 4261.603 kb on + strand, within CA264_18330at 4261.603 kb on + strand, within CA264_18330at 4261.661 kb on - strand, within CA264_18330at 4261.661 kb on - strand, within CA264_18330at 4261.661 kb on - strand, within CA264_18330at 4261.694 kb on + strand, within CA264_18330at 4261.739 kb on + strand, within CA264_18330at 4261.772 kb on + strand, within CA264_18330

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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4,259,004 + CA264_18315 0.18 +0.4
4,259,036 + CA264_18315 0.21 +0.3
4,259,036 + CA264_18315 0.21 -0.1
4,259,089 + CA264_18315 0.26 -0.6
4,259,089 + CA264_18315 0.26 +0.4
4,259,090 - CA264_18315 0.26 +0.1
4,259,090 - CA264_18315 0.26 +0.8
4,259,157 - CA264_18315 0.32 +0.8
4,259,251 + CA264_18315 0.40 -0.6
4,259,334 + CA264_18315 0.48 +0.1
4,259,335 - CA264_18315 0.48 +0.5
4,259,335 - CA264_18315 0.48 -0.8
4,259,383 + CA264_18315 0.52 -0.4
4,259,455 - CA264_18315 0.59 +0.2
4,259,455 - CA264_18315 0.59 +1.2
4,259,458 - CA264_18315 0.59 +0.0
4,259,497 - CA264_18315 0.63 +0.7
4,259,513 + CA264_18315 0.64 -0.5
4,259,611 - CA264_18315 0.73 +0.2
4,259,614 + CA264_18315 0.73 +0.5
4,259,682 - CA264_18315 0.80 +0.9
4,259,700 + CA264_18315 0.81 +0.7
4,259,700 + CA264_18315 0.81 -0.2
4,259,700 + CA264_18315 0.81 +0.3
4,259,701 - CA264_18315 0.81 +1.1
4,259,701 - CA264_18315 0.81 +1.0
4,259,702 + CA264_18315 0.81 +0.2
4,259,703 - CA264_18315 0.81 +0.5
4,259,707 + CA264_18315 0.82 -0.7
4,259,708 - CA264_18315 0.82 +0.5
4,259,708 - CA264_18315 0.82 +0.4
4,259,708 - CA264_18315 0.82 +0.3
4,259,708 - CA264_18315 0.82 -0.2
4,259,742 + CA264_18315 0.85 -0.3
4,259,742 + CA264_18315 0.85 -0.8
4,259,772 - CA264_18315 0.88 +0.0
4,259,774 + CA264_18315 0.88 -0.9
4,259,845 - +1.2
4,259,887 + +0.2
4,259,887 + +0.1
4,259,888 - -0.2
4,259,890 + -1.4
4,259,891 - +0.8
4,259,891 - +0.6
4,259,970 - -0.2
4,260,062 + +0.3
4,260,062 + -0.2
4,260,155 + CA264_18320 0.19 +0.5
4,260,211 - CA264_18320 0.26 +0.7
4,260,306 + CA264_18320 0.37 +0.4
4,260,306 + CA264_18320 0.37 -0.3
4,260,312 + CA264_18320 0.38 +0.0
4,260,342 + CA264_18320 0.42 -0.0
4,260,435 + CA264_18320 0.53 +0.4
4,260,471 + CA264_18320 0.58 -0.3
4,260,471 + CA264_18320 0.58 -0.3
4,260,472 - CA264_18320 0.58 +1.6
4,260,472 - CA264_18320 0.58 +0.7
4,260,599 + CA264_18320 0.73 +0.1
4,260,678 + CA264_18320 0.83 +0.1
4,260,678 + CA264_18320 0.83 -0.3
4,260,678 + CA264_18320 0.83 -0.4
4,260,691 + CA264_18320 0.84 -0.3
4,260,696 - CA264_18320 0.85 +0.8
4,260,728 + CA264_18320 0.89 -0.3
4,260,728 + CA264_18320 0.89 +0.3
4,260,739 - +1.0
4,261,299 + -0.8
4,261,312 - +0.7
4,261,334 - +0.4
4,261,399 - -0.3
4,261,399 - +0.2
4,261,399 - -1.0
4,261,402 + -0.2
4,261,403 - -1.2
4,261,404 + -0.2
4,261,422 - -0.3
4,261,467 + -0.2
4,261,574 - CA264_18330 0.19 -0.3
4,261,603 + CA264_18330 0.25 -0.2
4,261,603 + CA264_18330 0.25 +0.2
4,261,661 - CA264_18330 0.38 +0.3
4,261,661 - CA264_18330 0.38 -0.5
4,261,661 - CA264_18330 0.38 -0.4
4,261,694 + CA264_18330 0.46 -0.3
4,261,739 + CA264_18330 0.56 -0.4
4,261,772 + CA264_18330 0.63 -0.4

Or see this region's nucleotide sequence