Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18030

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18025 and CA264_18030 are separated by 155 nucleotidesCA264_18030 and CA264_18035 are separated by 109 nucleotidesCA264_18035 and CA264_18040 are separated by 65 nucleotides CA264_18025: CA264_18025 - sodium/alanine symporter, at 4,190,889 to 4,192,283 _18025 CA264_18030: CA264_18030 - cation transporter, at 4,192,439 to 4,193,710 _18030 CA264_18035: CA264_18035 - alpha-ketoglutarate-dependent dioxygenase AlkB, at 4,193,820 to 4,194,410 _18035 CA264_18040: CA264_18040 - kynurenine 3-monooxygenase, at 4,194,476 to 4,195,843 _18040 Position (kb) 4192 4193 4194Strain fitness (log2 ratio) -2 -1 0 1at 4191.549 kb on + strand, within CA264_18025at 4191.549 kb on + strand, within CA264_18025at 4191.549 kb on + strand, within CA264_18025at 4191.577 kb on + strand, within CA264_18025at 4191.577 kb on + strand, within CA264_18025at 4191.578 kb on - strand, within CA264_18025at 4191.578 kb on - strand, within CA264_18025at 4191.647 kb on + strand, within CA264_18025at 4191.877 kb on + strand, within CA264_18025at 4191.895 kb on - strand, within CA264_18025at 4191.923 kb on - strand, within CA264_18025at 4191.926 kb on + strand, within CA264_18025at 4192.096 kb on - strand, within CA264_18025at 4192.097 kb on + strand, within CA264_18025at 4192.123 kb on + strand, within CA264_18025at 4192.124 kb on - strand, within CA264_18025at 4192.142 kb on + strand, within CA264_18025at 4192.310 kb on + strandat 4192.316 kb on + strandat 4192.317 kb on - strandat 4192.318 kb on + strandat 4192.319 kb on - strandat 4192.337 kb on - strandat 4192.365 kb on - strandat 4192.373 kb on + strandat 4192.374 kb on - strandat 4192.376 kb on - strandat 4192.438 kb on + strandat 4192.438 kb on + strandat 4192.438 kb on + strandat 4192.438 kb on + strandat 4192.439 kb on - strandat 4192.439 kb on - strandat 4192.448 kb on + strandat 4192.448 kb on + strandat 4192.449 kb on - strandat 4192.449 kb on - strandat 4192.450 kb on + strandat 4192.451 kb on - strandat 4192.451 kb on - strandat 4192.452 kb on + strandat 4192.452 kb on + strandat 4192.513 kb on + strandat 4192.520 kb on - strandat 4192.520 kb on - strandat 4192.542 kb on + strandat 4192.554 kb on + strandat 4192.568 kb on + strand, within CA264_18030at 4192.569 kb on - strand, within CA264_18030at 4192.569 kb on - strand, within CA264_18030at 4192.581 kb on + strand, within CA264_18030at 4192.582 kb on - strand, within CA264_18030at 4192.619 kb on + strand, within CA264_18030at 4192.620 kb on - strand, within CA264_18030at 4192.620 kb on - strand, within CA264_18030at 4192.620 kb on - strand, within CA264_18030at 4192.692 kb on + strand, within CA264_18030at 4192.692 kb on + strand, within CA264_18030at 4192.693 kb on - strand, within CA264_18030at 4192.735 kb on + strand, within CA264_18030at 4192.736 kb on - strand, within CA264_18030at 4192.828 kb on - strand, within CA264_18030at 4193.040 kb on - strand, within CA264_18030at 4193.093 kb on + strand, within CA264_18030at 4193.267 kb on + strand, within CA264_18030at 4193.268 kb on - strand, within CA264_18030at 4193.302 kb on - strand, within CA264_18030at 4193.394 kb on + strand, within CA264_18030at 4193.395 kb on - strand, within CA264_18030at 4193.522 kb on + strand, within CA264_18030at 4193.542 kb on + strand, within CA264_18030at 4193.584 kb on - strandat 4193.613 kb on + strandat 4193.613 kb on + strandat 4193.808 kb on + strandat 4193.809 kb on - strandat 4193.834 kb on - strandat 4193.907 kb on + strand, within CA264_18035at 4193.908 kb on - strand, within CA264_18035at 4193.933 kb on - strand, within CA264_18035at 4193.953 kb on + strand, within CA264_18035at 4193.954 kb on - strand, within CA264_18035at 4194.021 kb on + strand, within CA264_18035at 4194.021 kb on + strand, within CA264_18035at 4194.022 kb on - strand, within CA264_18035at 4194.108 kb on + strand, within CA264_18035at 4194.109 kb on - strand, within CA264_18035at 4194.200 kb on + strand, within CA264_18035at 4194.302 kb on - strand, within CA264_18035at 4194.350 kb on + strand, within CA264_18035at 4194.351 kb on - strand, within CA264_18035at 4194.445 kb on + strandat 4194.476 kb on - strandat 4194.540 kb on - strandat 4194.675 kb on + strand, within CA264_18040at 4194.675 kb on + strand, within CA264_18040at 4194.710 kb on + strand, within CA264_18040

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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4,191,549 + CA264_18025 0.47 -0.6
4,191,549 + CA264_18025 0.47 -1.7
4,191,549 + CA264_18025 0.47 +0.2
4,191,577 + CA264_18025 0.49 -0.4
4,191,577 + CA264_18025 0.49 +0.3
4,191,578 - CA264_18025 0.49 -0.3
4,191,578 - CA264_18025 0.49 +0.1
4,191,647 + CA264_18025 0.54 -0.2
4,191,877 + CA264_18025 0.71 -0.0
4,191,895 - CA264_18025 0.72 -0.2
4,191,923 - CA264_18025 0.74 -0.7
4,191,926 + CA264_18025 0.74 -0.1
4,192,096 - CA264_18025 0.87 -0.2
4,192,097 + CA264_18025 0.87 -0.2
4,192,123 + CA264_18025 0.88 -1.0
4,192,124 - CA264_18025 0.89 +0.7
4,192,142 + CA264_18025 0.90 +0.1
4,192,310 + -2.6
4,192,316 + +0.0
4,192,317 - -1.0
4,192,318 + -1.1
4,192,319 - -1.2
4,192,337 - -0.2
4,192,365 - -1.8
4,192,373 + +0.1
4,192,374 - -1.0
4,192,376 - -0.1
4,192,438 + -0.9
4,192,438 + +0.1
4,192,438 + -0.7
4,192,438 + -1.0
4,192,439 - -2.2
4,192,439 - -1.0
4,192,448 + +1.4
4,192,448 + -1.0
4,192,449 - -0.8
4,192,449 - -0.4
4,192,450 + -0.5
4,192,451 - -1.1
4,192,451 - -0.7
4,192,452 + -0.5
4,192,452 + -0.1
4,192,513 + -0.3
4,192,520 - -0.5
4,192,520 - -1.3
4,192,542 + +0.2
4,192,554 + -1.4
4,192,568 + CA264_18030 0.10 -0.1
4,192,569 - CA264_18030 0.10 -1.1
4,192,569 - CA264_18030 0.10 -0.3
4,192,581 + CA264_18030 0.11 -0.1
4,192,582 - CA264_18030 0.11 +0.2
4,192,619 + CA264_18030 0.14 +0.0
4,192,620 - CA264_18030 0.14 -1.8
4,192,620 - CA264_18030 0.14 -0.9
4,192,620 - CA264_18030 0.14 +0.0
4,192,692 + CA264_18030 0.20 +0.7
4,192,692 + CA264_18030 0.20 -0.4
4,192,693 - CA264_18030 0.20 -0.9
4,192,735 + CA264_18030 0.23 -0.7
4,192,736 - CA264_18030 0.23 -1.0
4,192,828 - CA264_18030 0.31 -1.0
4,193,040 - CA264_18030 0.47 -0.6
4,193,093 + CA264_18030 0.51 +0.8
4,193,267 + CA264_18030 0.65 +0.6
4,193,268 - CA264_18030 0.65 -0.6
4,193,302 - CA264_18030 0.68 -1.3
4,193,394 + CA264_18030 0.75 +0.0
4,193,395 - CA264_18030 0.75 -0.9
4,193,522 + CA264_18030 0.85 +0.2
4,193,542 + CA264_18030 0.87 +0.5
4,193,584 - +0.2
4,193,613 + +1.0
4,193,613 + +0.3
4,193,808 + -0.7
4,193,809 - +0.2
4,193,834 - -0.3
4,193,907 + CA264_18035 0.15 +0.2
4,193,908 - CA264_18035 0.15 -1.1
4,193,933 - CA264_18035 0.19 +0.1
4,193,953 + CA264_18035 0.23 +0.3
4,193,954 - CA264_18035 0.23 -0.1
4,194,021 + CA264_18035 0.34 +0.1
4,194,021 + CA264_18035 0.34 -0.5
4,194,022 - CA264_18035 0.34 +0.5
4,194,108 + CA264_18035 0.49 -0.2
4,194,109 - CA264_18035 0.49 +1.6
4,194,200 + CA264_18035 0.64 +0.2
4,194,302 - CA264_18035 0.82 -0.2
4,194,350 + CA264_18035 0.90 +1.2
4,194,351 - CA264_18035 0.90 +0.7
4,194,445 + +0.5
4,194,476 - -0.3
4,194,540 - -0.8
4,194,675 + CA264_18040 0.15 +0.3
4,194,675 + CA264_18040 0.15 +0.9
4,194,710 + CA264_18040 0.17 +0.2

Or see this region's nucleotide sequence