Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_17950 and CA264_17955 are separated by 10 nucleotides CA264_17955 and CA264_17960 are separated by 194 nucleotides
CA264_17950: CA264_17950 - hypothetical protein, at 4,171,623 to 4,172,615
_17950
CA264_17955: CA264_17955 - hypothetical protein, at 4,172,626 to 4,173,099
_17955
CA264_17960: CA264_17960 - proline--tRNA ligase, at 4,173,294 to 4,174,772
_17960
Position (kb)
4172
4173
4174 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4171.640 kb on + strand at 4171.720 kb on + strand at 4171.720 kb on + strand at 4171.731 kb on - strand, within CA264_17950 at 4171.798 kb on - strand, within CA264_17950 at 4171.888 kb on - strand, within CA264_17950 at 4171.888 kb on - strand, within CA264_17950 at 4171.962 kb on - strand, within CA264_17950 at 4171.966 kb on - strand, within CA264_17950 at 4171.982 kb on - strand, within CA264_17950 at 4172.010 kb on + strand, within CA264_17950 at 4172.145 kb on + strand, within CA264_17950 at 4172.316 kb on + strand, within CA264_17950 at 4172.557 kb on - strand at 4172.619 kb on + strand at 4172.620 kb on - strand at 4172.620 kb on - strand at 4172.620 kb on - strand at 4172.620 kb on - strand at 4172.622 kb on - strand at 4172.628 kb on - strand at 4172.641 kb on + strand at 4172.652 kb on + strand at 4172.653 kb on - strand at 4172.700 kb on - strand, within CA264_17955 at 4172.724 kb on - strand, within CA264_17955 at 4172.821 kb on + strand, within CA264_17955 at 4172.882 kb on + strand, within CA264_17955 at 4172.924 kb on - strand, within CA264_17955 at 4172.924 kb on - strand, within CA264_17955 at 4172.987 kb on - strand, within CA264_17955 at 4173.038 kb on - strand, within CA264_17955 at 4173.075 kb on + strand at 4173.076 kb on - strand at 4173.095 kb on - strand at 4173.100 kb on - strand at 4173.100 kb on - strand at 4173.102 kb on + strand at 4173.121 kb on - strand at 4173.125 kb on - strand at 4173.125 kb on - strand at 4173.125 kb on - strand at 4173.127 kb on - strand at 4173.154 kb on - strand at 4173.247 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 4,171,640 + +0.8 4,171,720 + +0.2 4,171,720 + -0.6 4,171,731 - CA264_17950 0.11 -1.5 4,171,798 - CA264_17950 0.18 +0.6 4,171,888 - CA264_17950 0.27 +0.6 4,171,888 - CA264_17950 0.27 -0.4 4,171,962 - CA264_17950 0.34 +0.7 4,171,966 - CA264_17950 0.35 +0.1 4,171,982 - CA264_17950 0.36 -0.1 4,172,010 + CA264_17950 0.39 +0.9 4,172,145 + CA264_17950 0.53 +0.6 4,172,316 + CA264_17950 0.70 -1.0 4,172,557 - +0.1 4,172,619 + -0.5 4,172,620 - -0.5 4,172,620 - +0.3 4,172,620 - -0.2 4,172,620 - +0.1 4,172,622 - +0.0 4,172,628 - -3.0 4,172,641 + +0.4 4,172,652 + -0.1 4,172,653 - +0.0 4,172,700 - CA264_17955 0.16 -0.5 4,172,724 - CA264_17955 0.21 -0.6 4,172,821 + CA264_17955 0.41 -0.8 4,172,882 + CA264_17955 0.54 -0.2 4,172,924 - CA264_17955 0.63 -1.2 4,172,924 - CA264_17955 0.63 -2.1 4,172,987 - CA264_17955 0.76 +0.4 4,173,038 - CA264_17955 0.87 +0.0 4,173,075 + +0.6 4,173,076 - -0.2 4,173,095 - -0.1 4,173,100 - -1.5 4,173,100 - -0.5 4,173,102 + +1.3 4,173,121 - +0.2 4,173,125 - +0.0 4,173,125 - +0.0 4,173,125 - +0.3 4,173,127 - -0.7 4,173,154 - +1.3 4,173,247 - +0.0
Or see this region's nucleotide sequence