Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17865

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17860 and CA264_17865 are separated by 53 nucleotidesCA264_17865 and CA264_17870 are separated by 96 nucleotidesCA264_17870 and CA264_17875 are separated by 105 nucleotides CA264_17860: CA264_17860 - tRNA dihydrouridine synthase DusB, at 4,153,205 to 4,154,194 _17860 CA264_17865: CA264_17865 - CPBP family intramembrane metalloprotease domain-containing protein, at 4,154,248 to 4,155,213 _17865 CA264_17870: CA264_17870 - phosphatidate cytidylyltransferase, at 4,155,310 to 4,156,095 _17870 CA264_17875: CA264_17875 - amino acid dehydrogenase, at 4,156,201 to 4,157,475 _17875 Position (kb) 4154 4155 4156Strain fitness (log2 ratio) -1 0 1at 4153.335 kb on + strand, within CA264_17860at 4153.409 kb on + strand, within CA264_17860at 4153.445 kb on + strand, within CA264_17860at 4153.465 kb on - strand, within CA264_17860at 4153.465 kb on - strand, within CA264_17860at 4153.465 kb on - strand, within CA264_17860at 4153.484 kb on + strand, within CA264_17860at 4153.537 kb on - strand, within CA264_17860at 4153.574 kb on + strand, within CA264_17860at 4153.659 kb on + strand, within CA264_17860at 4153.660 kb on - strand, within CA264_17860at 4153.686 kb on - strand, within CA264_17860at 4153.741 kb on - strand, within CA264_17860at 4153.802 kb on + strand, within CA264_17860at 4153.897 kb on - strand, within CA264_17860at 4154.065 kb on + strand, within CA264_17860at 4154.082 kb on - strand, within CA264_17860at 4154.082 kb on - strand, within CA264_17860at 4154.129 kb on + strandat 4154.129 kb on + strandat 4154.169 kb on - strandat 4154.169 kb on - strandat 4154.174 kb on + strandat 4154.174 kb on + strandat 4154.179 kb on + strandat 4154.190 kb on - strandat 4154.232 kb on - strandat 4155.211 kb on + strandat 4155.212 kb on - strandat 4155.223 kb on - strandat 4155.233 kb on + strandat 4155.233 kb on + strandat 4155.233 kb on + strandat 4155.233 kb on + strandat 4155.236 kb on - strandat 4156.125 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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4,153,335 + CA264_17860 0.13 +0.9
4,153,409 + CA264_17860 0.21 -0.8
4,153,445 + CA264_17860 0.24 +0.0
4,153,465 - CA264_17860 0.26 +0.1
4,153,465 - CA264_17860 0.26 +0.2
4,153,465 - CA264_17860 0.26 +0.6
4,153,484 + CA264_17860 0.28 -0.1
4,153,537 - CA264_17860 0.34 +0.2
4,153,574 + CA264_17860 0.37 -0.3
4,153,659 + CA264_17860 0.46 -0.9
4,153,660 - CA264_17860 0.46 +1.0
4,153,686 - CA264_17860 0.49 +0.2
4,153,741 - CA264_17860 0.54 +0.7
4,153,802 + CA264_17860 0.60 -1.2
4,153,897 - CA264_17860 0.70 +0.6
4,154,065 + CA264_17860 0.87 -0.7
4,154,082 - CA264_17860 0.89 +0.6
4,154,082 - CA264_17860 0.89 -0.1
4,154,129 + -0.8
4,154,129 + -1.0
4,154,169 - +1.0
4,154,169 - +1.2
4,154,174 + +0.2
4,154,174 + -0.1
4,154,179 + -0.9
4,154,190 - +0.0
4,154,232 - +0.4
4,155,211 + -1.1
4,155,212 - -0.1
4,155,223 - +0.2
4,155,233 + +0.6
4,155,233 + +0.1
4,155,233 + +0.3
4,155,233 + -1.2
4,155,236 - +0.1
4,156,125 + +0.0

Or see this region's nucleotide sequence