Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_17480 and CA264_17485 are separated by 118 nucleotides CA264_17485 and CA264_17490 are separated by 158 nucleotides CA264_17490 and CA264_17495 are separated by 156 nucleotides
CA264_17480: CA264_17480 - pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha, at 4,073,589 to 4,074,635
_17480
CA264_17485: CA264_17485 - cytochrome C biosynthesis protein, at 4,074,754 to 4,075,473
_17485
CA264_17490: CA264_17490 - 6,7-dimethyl-8-ribityllumazine synthase, at 4,075,632 to 4,076,108
_17490
CA264_17495: CA264_17495 - hypothetical protein, at 4,076,265 to 4,076,855
_17495
Position (kb)
4074
4075
4076 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4074.061 kb on + strand, within CA264_17480 at 4074.694 kb on + strand at 4074.707 kb on + strand at 4074.707 kb on + strand at 4074.724 kb on + strand at 4074.743 kb on + strand at 4074.743 kb on + strand at 4074.749 kb on + strand at 4075.390 kb on + strand, within CA264_17485 at 4075.427 kb on - strand at 4075.427 kb on - strand at 4075.429 kb on - strand at 4075.472 kb on - strand at 4075.493 kb on + strand at 4075.494 kb on - strand at 4075.494 kb on - strand at 4075.578 kb on - strand at 4075.646 kb on - strand at 4076.136 kb on + strand at 4076.140 kb on + strand at 4076.184 kb on - strand at 4076.364 kb on - strand, within CA264_17495 at 4076.369 kb on + strand, within CA264_17495
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 4,074,061 + CA264_17480 0.45 -0.4 4,074,694 + -0.2 4,074,707 + -0.3 4,074,707 + -0.4 4,074,724 + +0.2 4,074,743 + +0.8 4,074,743 + -0.4 4,074,749 + -2.0 4,075,390 + CA264_17485 0.88 -1.3 4,075,427 - -1.2 4,075,427 - -0.2 4,075,429 - -2.6 4,075,472 - +0.0 4,075,493 + +0.3 4,075,494 - -1.2 4,075,494 - -1.0 4,075,578 - -0.9 4,075,646 - +2.0 4,076,136 + +0.3 4,076,140 + +1.1 4,076,184 - +0.7 4,076,364 - CA264_17495 0.17 +2.0 4,076,369 + CA264_17495 0.18 +1.0
Or see this region's nucleotide sequence