Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16805

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16800 and CA264_16805 are separated by 376 nucleotidesCA264_16805 and CA264_16810 are separated by 70 nucleotides CA264_16800: CA264_16800 - ribonucleoside-diphosphate reductase, at 3,919,436 to 3,920,395 _16800 CA264_16805: CA264_16805 - ribonucleoside-diphosphate reductase subunit alpha, at 3,920,772 to 3,923,156 _16805 CA264_16810: CA264_16810 - hypothetical protein, at 3,923,227 to 3,924,711 _16810 Position (kb) 3920 3921 3922 3923 3924Strain fitness (log2 ratio) -2 -1 0 1 2at 3920.407 kb on - strandat 3920.414 kb on - strandat 3920.420 kb on - strandat 3920.467 kb on - strandat 3920.474 kb on + strandat 3920.588 kb on - strandat 3920.590 kb on - strandat 3920.591 kb on + strandat 3920.626 kb on + strandat 3920.641 kb on + strandat 3920.649 kb on + strandat 3920.718 kb on - strandat 3920.718 kb on - strandat 3920.718 kb on - strandat 3920.719 kb on + strandat 3920.719 kb on + strandat 3920.720 kb on - strandat 3920.720 kb on - strandat 3920.722 kb on - strandat 3920.722 kb on - strandat 3920.728 kb on + strandat 3920.764 kb on + strandat 3923.178 kb on + strandat 3923.221 kb on - strandat 3923.222 kb on + strandat 3923.246 kb on + strandat 3923.246 kb on + strandat 3923.247 kb on - strandat 3923.247 kb on - strandat 3923.250 kb on + strandat 3923.250 kb on + strandat 3923.251 kb on - strandat 3923.377 kb on + strand, within CA264_16810at 3923.388 kb on + strand, within CA264_16810at 3923.412 kb on + strand, within CA264_16810at 3923.413 kb on - strand, within CA264_16810at 3923.413 kb on - strand, within CA264_16810at 3923.413 kb on - strand, within CA264_16810at 3923.413 kb on - strand, within CA264_16810at 3923.414 kb on + strand, within CA264_16810at 3923.414 kb on + strand, within CA264_16810at 3923.418 kb on + strand, within CA264_16810at 3923.419 kb on - strand, within CA264_16810at 3923.421 kb on + strand, within CA264_16810at 3923.421 kb on + strand, within CA264_16810at 3923.421 kb on + strand, within CA264_16810at 3923.433 kb on - strand, within CA264_16810at 3923.433 kb on - strand, within CA264_16810at 3923.433 kb on - strand, within CA264_16810at 3923.442 kb on + strand, within CA264_16810at 3923.443 kb on - strand, within CA264_16810at 3923.445 kb on - strand, within CA264_16810at 3923.449 kb on + strand, within CA264_16810at 3923.450 kb on - strand, within CA264_16810at 3923.454 kb on + strand, within CA264_16810at 3923.455 kb on - strand, within CA264_16810at 3923.487 kb on - strand, within CA264_16810at 3923.509 kb on - strand, within CA264_16810at 3923.524 kb on + strand, within CA264_16810at 3923.524 kb on + strand, within CA264_16810at 3923.524 kb on + strand, within CA264_16810at 3923.537 kb on + strand, within CA264_16810at 3923.544 kb on + strand, within CA264_16810at 3923.545 kb on - strand, within CA264_16810at 3923.545 kb on - strand, within CA264_16810at 3923.545 kb on - strand, within CA264_16810at 3923.558 kb on + strand, within CA264_16810at 3923.558 kb on + strand, within CA264_16810at 3923.591 kb on + strand, within CA264_16810at 3923.626 kb on - strand, within CA264_16810at 3923.681 kb on + strand, within CA264_16810at 3923.724 kb on - strand, within CA264_16810at 3923.728 kb on + strand, within CA264_16810at 3923.731 kb on - strand, within CA264_16810at 3923.731 kb on - strand, within CA264_16810at 3923.732 kb on + strand, within CA264_16810at 3923.732 kb on + strand, within CA264_16810at 3923.742 kb on - strand, within CA264_16810at 3923.772 kb on + strand, within CA264_16810at 3923.784 kb on + strand, within CA264_16810at 3923.787 kb on - strand, within CA264_16810at 3923.870 kb on + strand, within CA264_16810at 3923.871 kb on - strand, within CA264_16810at 3923.871 kb on - strand, within CA264_16810at 3923.884 kb on - strand, within CA264_16810at 3923.884 kb on - strand, within CA264_16810at 3923.890 kb on - strand, within CA264_16810at 3923.918 kb on + strand, within CA264_16810at 3923.919 kb on - strand, within CA264_16810at 3924.021 kb on + strand, within CA264_16810at 3924.040 kb on + strand, within CA264_16810at 3924.111 kb on + strand, within CA264_16810at 3924.112 kb on - strand, within CA264_16810at 3924.138 kb on + strand, within CA264_16810at 3924.147 kb on + strand, within CA264_16810

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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3,920,407 - +0.4
3,920,414 - -1.8
3,920,420 - -1.1
3,920,467 - -0.7
3,920,474 + +0.1
3,920,588 - +0.2
3,920,590 - -0.1
3,920,591 + +2.0
3,920,626 + +0.2
3,920,641 + -0.4
3,920,649 + -0.3
3,920,718 - -0.4
3,920,718 - -0.5
3,920,718 - -1.1
3,920,719 + +0.3
3,920,719 + +0.0
3,920,720 - -0.4
3,920,720 - -0.6
3,920,722 - +2.0
3,920,722 - -0.3
3,920,728 + +0.9
3,920,764 + -0.2
3,923,178 + -0.3
3,923,221 - -0.0
3,923,222 + -0.2
3,923,246 + -0.8
3,923,246 + +0.4
3,923,247 - +0.4
3,923,247 - +0.3
3,923,250 + -0.1
3,923,250 + +0.1
3,923,251 - -0.1
3,923,377 + CA264_16810 0.10 -0.2
3,923,388 + CA264_16810 0.11 +0.1
3,923,412 + CA264_16810 0.12 -0.0
3,923,413 - CA264_16810 0.13 +0.3
3,923,413 - CA264_16810 0.13 -0.7
3,923,413 - CA264_16810 0.13 +1.3
3,923,413 - CA264_16810 0.13 +0.7
3,923,414 + CA264_16810 0.13 -1.4
3,923,414 + CA264_16810 0.13 +2.5
3,923,418 + CA264_16810 0.13 -0.3
3,923,419 - CA264_16810 0.13 +0.7
3,923,421 + CA264_16810 0.13 -2.3
3,923,421 + CA264_16810 0.13 +0.2
3,923,421 + CA264_16810 0.13 -0.9
3,923,433 - CA264_16810 0.14 +0.2
3,923,433 - CA264_16810 0.14 +0.3
3,923,433 - CA264_16810 0.14 +0.0
3,923,442 + CA264_16810 0.14 +0.2
3,923,443 - CA264_16810 0.15 +0.1
3,923,445 - CA264_16810 0.15 +0.2
3,923,449 + CA264_16810 0.15 -0.6
3,923,450 - CA264_16810 0.15 +0.9
3,923,454 + CA264_16810 0.15 -0.3
3,923,455 - CA264_16810 0.15 +0.8
3,923,487 - CA264_16810 0.18 -0.0
3,923,509 - CA264_16810 0.19 -0.0
3,923,524 + CA264_16810 0.20 -0.5
3,923,524 + CA264_16810 0.20 -1.3
3,923,524 + CA264_16810 0.20 -0.3
3,923,537 + CA264_16810 0.21 -0.8
3,923,544 + CA264_16810 0.21 -0.3
3,923,545 - CA264_16810 0.21 -0.6
3,923,545 - CA264_16810 0.21 -0.7
3,923,545 - CA264_16810 0.21 +0.2
3,923,558 + CA264_16810 0.22 -0.3
3,923,558 + CA264_16810 0.22 -1.4
3,923,591 + CA264_16810 0.25 -0.6
3,923,626 - CA264_16810 0.27 -0.1
3,923,681 + CA264_16810 0.31 -0.2
3,923,724 - CA264_16810 0.33 +0.4
3,923,728 + CA264_16810 0.34 -0.5
3,923,731 - CA264_16810 0.34 +0.5
3,923,731 - CA264_16810 0.34 +0.2
3,923,732 + CA264_16810 0.34 -1.0
3,923,732 + CA264_16810 0.34 -0.8
3,923,742 - CA264_16810 0.35 +1.6
3,923,772 + CA264_16810 0.37 -0.2
3,923,784 + CA264_16810 0.38 -0.4
3,923,787 - CA264_16810 0.38 +1.3
3,923,870 + CA264_16810 0.43 -0.5
3,923,871 - CA264_16810 0.43 -0.9
3,923,871 - CA264_16810 0.43 -0.5
3,923,884 - CA264_16810 0.44 -0.9
3,923,884 - CA264_16810 0.44 -0.9
3,923,890 - CA264_16810 0.45 -0.5
3,923,918 + CA264_16810 0.47 -0.5
3,923,919 - CA264_16810 0.47 -1.0
3,924,021 + CA264_16810 0.53 -0.4
3,924,040 + CA264_16810 0.55 +0.1
3,924,111 + CA264_16810 0.60 -0.6
3,924,112 - CA264_16810 0.60 -0.5
3,924,138 + CA264_16810 0.61 -0.5
3,924,147 + CA264_16810 0.62 +0.0

Or see this region's nucleotide sequence