Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15850

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15840 and CA264_15845 are separated by 198 nucleotidesCA264_15845 and CA264_15850 are separated by 186 nucleotidesCA264_15850 and CA264_15855 are separated by 66 nucleotides CA264_15840: CA264_15840 - hypothetical protein, at 3,698,090 to 3,698,932 _15840 CA264_15845: CA264_15845 - hypothetical protein, at 3,699,131 to 3,699,583 _15845 CA264_15850: CA264_15850 - IclR family transcriptional regulator, at 3,699,770 to 3,700,348 _15850 CA264_15855: CA264_15855 - aminotransferase, at 3,700,415 to 3,701,563 _15855 Position (kb) 3699 3700 3701Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3698.894 kb on + strandat 3698.937 kb on + strandat 3698.939 kb on + strandat 3698.944 kb on - strandat 3698.968 kb on + strandat 3698.973 kb on + strandat 3698.974 kb on - strandat 3698.974 kb on - strandat 3699.020 kb on + strandat 3699.040 kb on - strandat 3699.044 kb on + strandat 3699.045 kb on - strandat 3699.079 kb on - strandat 3699.083 kb on + strandat 3699.115 kb on + strandat 3699.116 kb on - strandat 3699.266 kb on - strand, within CA264_15845at 3699.267 kb on + strand, within CA264_15845at 3699.408 kb on - strand, within CA264_15845at 3699.462 kb on + strand, within CA264_15845at 3699.572 kb on + strandat 3699.573 kb on - strandat 3699.751 kb on - strandat 3699.751 kb on - strandat 3699.992 kb on + strand, within CA264_15850at 3700.137 kb on + strand, within CA264_15850at 3700.141 kb on + strand, within CA264_15850at 3700.152 kb on - strand, within CA264_15850at 3700.206 kb on + strand, within CA264_15850at 3700.223 kb on + strand, within CA264_15850at 3700.223 kb on + strand, within CA264_15850at 3700.224 kb on - strand, within CA264_15850at 3700.224 kb on - strand, within CA264_15850at 3700.311 kb on + strandat 3700.316 kb on + strandat 3700.316 kb on + strandat 3700.317 kb on - strandat 3700.317 kb on - strandat 3700.320 kb on + strandat 3700.342 kb on + strandat 3700.343 kb on - strandat 3700.356 kb on + strandat 3700.356 kb on + strandat 3700.356 kb on + strandat 3700.356 kb on + strandat 3700.356 kb on + strandat 3700.357 kb on - strandat 3700.357 kb on - strandat 3700.357 kb on - strandat 3700.357 kb on - strandat 3700.357 kb on - strandat 3700.358 kb on + strandat 3700.359 kb on - strandat 3700.359 kb on - strandat 3700.359 kb on - strandat 3700.359 kb on - strandat 3700.403 kb on + strandat 3700.404 kb on - strandat 3700.404 kb on - strandat 3700.406 kb on + strandat 3700.412 kb on + strandat 3700.412 kb on + strandat 3700.414 kb on + strandat 3700.414 kb on + strandat 3700.419 kb on + strandat 3700.419 kb on + strandat 3700.419 kb on + strandat 3700.551 kb on + strand, within CA264_15855at 3700.655 kb on + strand, within CA264_15855at 3700.686 kb on + strand, within CA264_15855at 3700.729 kb on + strand, within CA264_15855at 3700.730 kb on - strand, within CA264_15855at 3700.787 kb on + strand, within CA264_15855at 3700.787 kb on + strand, within CA264_15855at 3700.787 kb on + strand, within CA264_15855at 3700.787 kb on + strand, within CA264_15855at 3700.823 kb on - strand, within CA264_15855at 3700.826 kb on + strand, within CA264_15855at 3700.826 kb on + strand, within CA264_15855at 3700.826 kb on + strand, within CA264_15855at 3700.826 kb on + strand, within CA264_15855at 3700.827 kb on - strand, within CA264_15855at 3700.827 kb on - strand, within CA264_15855at 3700.827 kb on - strand, within CA264_15855at 3700.873 kb on - strand, within CA264_15855at 3701.018 kb on + strand, within CA264_15855at 3701.018 kb on + strand, within CA264_15855at 3701.019 kb on - strand, within CA264_15855at 3701.019 kb on - strand, within CA264_15855at 3701.051 kb on + strand, within CA264_15855at 3701.200 kb on + strand, within CA264_15855at 3701.234 kb on - strand, within CA264_15855at 3701.265 kb on - strand, within CA264_15855at 3701.341 kb on + strand, within CA264_15855at 3701.342 kb on - strand, within CA264_15855at 3701.344 kb on - strand, within CA264_15855

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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3,698,894 + +0.2
3,698,937 + +0.0
3,698,939 + +1.0
3,698,944 - +0.1
3,698,968 + +0.9
3,698,973 + +0.7
3,698,974 - +0.5
3,698,974 - +0.9
3,699,020 + +0.3
3,699,040 - +0.4
3,699,044 + -0.4
3,699,045 - +0.6
3,699,079 - +0.2
3,699,083 + -0.4
3,699,115 + -0.5
3,699,116 - +0.6
3,699,266 - CA264_15845 0.30 +0.0
3,699,267 + CA264_15845 0.30 -0.3
3,699,408 - CA264_15845 0.61 +0.3
3,699,462 + CA264_15845 0.73 -1.9
3,699,572 + +0.0
3,699,573 - +0.3
3,699,751 - -2.0
3,699,751 - -0.9
3,699,992 + CA264_15850 0.38 -0.5
3,700,137 + CA264_15850 0.63 -3.9
3,700,141 + CA264_15850 0.64 -4.1
3,700,152 - CA264_15850 0.66 -3.6
3,700,206 + CA264_15850 0.75 -4.0
3,700,223 + CA264_15850 0.78 -4.2
3,700,223 + CA264_15850 0.78 -1.8
3,700,224 - CA264_15850 0.78 +0.7
3,700,224 - CA264_15850 0.78 -1.1
3,700,311 + -2.2
3,700,316 + -0.5
3,700,316 + -3.8
3,700,317 - -0.8
3,700,317 - -1.4
3,700,320 + -2.9
3,700,342 + -2.8
3,700,343 - -2.2
3,700,356 + -0.5
3,700,356 + -3.7
3,700,356 + -2.5
3,700,356 + -4.1
3,700,356 + -3.3
3,700,357 - -2.1
3,700,357 - -1.4
3,700,357 - -2.5
3,700,357 - -0.5
3,700,357 - -1.1
3,700,358 + -3.8
3,700,359 - -1.3
3,700,359 - -1.1
3,700,359 - -1.1
3,700,359 - -1.6
3,700,403 + -1.4
3,700,404 - -0.3
3,700,404 - +1.3
3,700,406 + -0.1
3,700,412 + +0.9
3,700,412 + -0.1
3,700,414 + +0.1
3,700,414 + +0.7
3,700,419 + -0.3
3,700,419 + -0.0
3,700,419 + +0.5
3,700,551 + CA264_15855 0.12 +0.2
3,700,655 + CA264_15855 0.21 -0.5
3,700,686 + CA264_15855 0.24 -2.4
3,700,729 + CA264_15855 0.27 +0.0
3,700,730 - CA264_15855 0.27 -0.1
3,700,787 + CA264_15855 0.32 +1.8
3,700,787 + CA264_15855 0.32 +0.3
3,700,787 + CA264_15855 0.32 -1.2
3,700,787 + CA264_15855 0.32 +0.2
3,700,823 - CA264_15855 0.36 +0.5
3,700,826 + CA264_15855 0.36 +0.0
3,700,826 + CA264_15855 0.36 +0.2
3,700,826 + CA264_15855 0.36 +0.0
3,700,826 + CA264_15855 0.36 +1.6
3,700,827 - CA264_15855 0.36 +0.4
3,700,827 - CA264_15855 0.36 -0.9
3,700,827 - CA264_15855 0.36 +0.8
3,700,873 - CA264_15855 0.40 +1.1
3,701,018 + CA264_15855 0.52 +0.2
3,701,018 + CA264_15855 0.52 -0.1
3,701,019 - CA264_15855 0.53 -0.8
3,701,019 - CA264_15855 0.53 -0.3
3,701,051 + CA264_15855 0.55 +0.2
3,701,200 + CA264_15855 0.68 -0.3
3,701,234 - CA264_15855 0.71 -0.9
3,701,265 - CA264_15855 0.74 +0.4
3,701,341 + CA264_15855 0.81 +0.2
3,701,342 - CA264_15855 0.81 -0.2
3,701,344 - CA264_15855 0.81 -0.1

Or see this region's nucleotide sequence