Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15735

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15730 and CA264_15735 are separated by 86 nucleotidesCA264_15735 and CA264_15740 are separated by 414 nucleotides CA264_15730: CA264_15730 - hypothetical protein, at 3,672,343 to 3,673,368 _15730 CA264_15735: CA264_15735 - hypothetical protein, at 3,673,455 to 3,677,234 _15735 CA264_15740: CA264_15740 - metal-dependent phosphohydrolase, at 3,677,649 to 3,678,881 _15740 Position (kb) 3673 3674 3675 3676 3677 3678Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3672.476 kb on + strand, within CA264_15730at 3672.477 kb on - strand, within CA264_15730at 3672.477 kb on - strand, within CA264_15730at 3672.585 kb on + strand, within CA264_15730at 3672.617 kb on + strand, within CA264_15730at 3672.617 kb on + strand, within CA264_15730at 3672.617 kb on + strand, within CA264_15730at 3672.774 kb on - strand, within CA264_15730at 3672.778 kb on - strand, within CA264_15730at 3672.809 kb on + strand, within CA264_15730at 3672.809 kb on + strand, within CA264_15730at 3672.873 kb on + strand, within CA264_15730at 3673.007 kb on + strand, within CA264_15730at 3673.060 kb on - strand, within CA264_15730at 3673.061 kb on + strand, within CA264_15730at 3673.061 kb on + strand, within CA264_15730at 3673.062 kb on - strand, within CA264_15730at 3673.131 kb on + strand, within CA264_15730at 3673.132 kb on - strand, within CA264_15730at 3673.134 kb on + strand, within CA264_15730at 3673.134 kb on + strand, within CA264_15730at 3673.135 kb on - strand, within CA264_15730at 3673.135 kb on - strand, within CA264_15730at 3673.271 kb on + strandat 3673.271 kb on + strandat 3673.279 kb on + strandat 3673.291 kb on - strandat 3673.291 kb on - strandat 3673.291 kb on - strandat 3673.327 kb on + strandat 3673.375 kb on - strandat 3673.433 kb on - strandat 3673.435 kb on - strandat 3673.440 kb on + strandat 3673.441 kb on - strandat 3673.451 kb on + strandat 3673.598 kb on + strandat 3673.665 kb on + strandat 3673.666 kb on - strandat 3673.815 kb on - strandat 3673.903 kb on + strand, within CA264_15735at 3673.904 kb on - strand, within CA264_15735at 3673.924 kb on - strand, within CA264_15735at 3673.936 kb on + strand, within CA264_15735at 3673.936 kb on + strand, within CA264_15735at 3674.035 kb on + strand, within CA264_15735at 3674.036 kb on - strand, within CA264_15735at 3674.071 kb on + strand, within CA264_15735at 3674.071 kb on + strand, within CA264_15735at 3674.071 kb on + strand, within CA264_15735at 3674.071 kb on + strand, within CA264_15735at 3674.071 kb on + strand, within CA264_15735at 3674.071 kb on + strand, within CA264_15735at 3674.072 kb on - strand, within CA264_15735at 3674.156 kb on - strand, within CA264_15735at 3674.242 kb on + strand, within CA264_15735at 3674.245 kb on + strand, within CA264_15735at 3674.245 kb on + strand, within CA264_15735at 3674.286 kb on + strand, within CA264_15735at 3674.368 kb on - strand, within CA264_15735at 3674.380 kb on + strand, within CA264_15735at 3674.391 kb on - strand, within CA264_15735at 3674.414 kb on - strand, within CA264_15735at 3674.515 kb on + strand, within CA264_15735at 3674.569 kb on + strand, within CA264_15735at 3674.569 kb on + strand, within CA264_15735at 3674.569 kb on + strand, within CA264_15735at 3674.577 kb on + strand, within CA264_15735at 3674.625 kb on - strand, within CA264_15735at 3674.723 kb on + strand, within CA264_15735at 3674.792 kb on - strand, within CA264_15735at 3674.821 kb on + strand, within CA264_15735at 3674.822 kb on - strand, within CA264_15735at 3674.850 kb on + strand, within CA264_15735at 3674.850 kb on + strand, within CA264_15735at 3674.851 kb on - strand, within CA264_15735at 3674.946 kb on + strand, within CA264_15735at 3674.974 kb on + strand, within CA264_15735at 3674.978 kb on - strand, within CA264_15735at 3675.087 kb on + strand, within CA264_15735at 3675.150 kb on + strand, within CA264_15735at 3675.158 kb on - strand, within CA264_15735at 3675.161 kb on + strand, within CA264_15735at 3675.161 kb on + strand, within CA264_15735at 3675.162 kb on - strand, within CA264_15735at 3675.290 kb on + strand, within CA264_15735at 3675.431 kb on - strand, within CA264_15735at 3675.431 kb on - strand, within CA264_15735at 3675.431 kb on - strand, within CA264_15735at 3675.622 kb on + strand, within CA264_15735at 3675.623 kb on - strand, within CA264_15735at 3675.691 kb on + strand, within CA264_15735at 3675.799 kb on + strand, within CA264_15735at 3675.980 kb on - strand, within CA264_15735at 3676.008 kb on - strand, within CA264_15735at 3676.019 kb on - strand, within CA264_15735at 3676.156 kb on + strand, within CA264_15735at 3676.157 kb on - strand, within CA264_15735at 3676.193 kb on - strand, within CA264_15735at 3676.219 kb on + strand, within CA264_15735at 3676.306 kb on + strand, within CA264_15735at 3676.306 kb on + strand, within CA264_15735at 3676.306 kb on + strand, within CA264_15735at 3676.307 kb on - strand, within CA264_15735at 3676.310 kb on + strand, within CA264_15735at 3676.310 kb on + strand, within CA264_15735at 3676.350 kb on + strand, within CA264_15735at 3676.350 kb on + strand, within CA264_15735at 3676.351 kb on + strand, within CA264_15735at 3676.351 kb on - strand, within CA264_15735at 3676.351 kb on - strand, within CA264_15735at 3676.354 kb on + strand, within CA264_15735at 3676.354 kb on + strand, within CA264_15735at 3676.417 kb on + strand, within CA264_15735at 3676.418 kb on - strand, within CA264_15735at 3676.448 kb on - strand, within CA264_15735at 3676.542 kb on + strand, within CA264_15735at 3676.543 kb on - strand, within CA264_15735at 3676.554 kb on - strand, within CA264_15735at 3676.554 kb on - strand, within CA264_15735at 3676.628 kb on + strand, within CA264_15735at 3676.629 kb on - strand, within CA264_15735at 3676.686 kb on + strand, within CA264_15735at 3676.751 kb on - strand, within CA264_15735at 3676.902 kb on + strandat 3676.903 kb on - strandat 3676.903 kb on - strandat 3676.948 kb on + strandat 3676.949 kb on - strandat 3676.949 kb on - strandat 3676.978 kb on + strandat 3676.978 kb on + strandat 3676.999 kb on - strandat 3677.107 kb on + strandat 3677.108 kb on - strandat 3677.171 kb on - strandat 3677.180 kb on + strandat 3677.180 kb on + strandat 3677.181 kb on - strandat 3677.181 kb on - strandat 3677.271 kb on - strandat 3677.274 kb on - strandat 3677.275 kb on + strandat 3677.275 kb on + strandat 3677.275 kb on + strandat 3677.275 kb on + strandat 3677.275 kb on + strandat 3677.275 kb on + strandat 3677.276 kb on - strandat 3677.276 kb on - strandat 3677.276 kb on - strandat 3677.287 kb on + strandat 3677.287 kb on + strandat 3677.288 kb on - strandat 3677.288 kb on - strandat 3677.479 kb on + strandat 3677.479 kb on + strandat 3677.487 kb on - strandat 3677.494 kb on + strandat 3677.530 kb on - strandat 3677.532 kb on + strandat 3677.702 kb on - strandat 3677.764 kb on - strandat 3677.773 kb on - strand, within CA264_15740at 3677.781 kb on - strand, within CA264_15740at 3677.886 kb on + strand, within CA264_15740at 3677.898 kb on + strand, within CA264_15740at 3677.898 kb on + strand, within CA264_15740at 3677.898 kb on + strand, within CA264_15740at 3677.898 kb on + strand, within CA264_15740at 3677.982 kb on - strand, within CA264_15740at 3677.982 kb on - strand, within CA264_15740at 3677.993 kb on + strand, within CA264_15740at 3678.043 kb on + strand, within CA264_15740at 3678.044 kb on - strand, within CA264_15740at 3678.044 kb on - strand, within CA264_15740at 3678.184 kb on + strand, within CA264_15740

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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3,672,476 + CA264_15730 0.13 +0.3
3,672,477 - CA264_15730 0.13 +0.2
3,672,477 - CA264_15730 0.13 +0.7
3,672,585 + CA264_15730 0.24 -1.3
3,672,617 + CA264_15730 0.27 -1.8
3,672,617 + CA264_15730 0.27 -0.4
3,672,617 + CA264_15730 0.27 -1.1
3,672,774 - CA264_15730 0.42 +0.3
3,672,778 - CA264_15730 0.42 -1.2
3,672,809 + CA264_15730 0.45 -1.3
3,672,809 + CA264_15730 0.45 +0.1
3,672,873 + CA264_15730 0.52 -0.4
3,673,007 + CA264_15730 0.65 +3.1
3,673,060 - CA264_15730 0.70 +0.2
3,673,061 + CA264_15730 0.70 -0.5
3,673,061 + CA264_15730 0.70 -0.7
3,673,062 - CA264_15730 0.70 +0.4
3,673,131 + CA264_15730 0.77 -1.3
3,673,132 - CA264_15730 0.77 +0.1
3,673,134 + CA264_15730 0.77 -0.8
3,673,134 + CA264_15730 0.77 -2.3
3,673,135 - CA264_15730 0.77 -2.0
3,673,135 - CA264_15730 0.77 +0.1
3,673,271 + -0.1
3,673,271 + +0.2
3,673,279 + +0.1
3,673,291 - +0.2
3,673,291 - +0.2
3,673,291 - +0.3
3,673,327 + -2.7
3,673,375 - +0.3
3,673,433 - -0.6
3,673,435 - -0.4
3,673,440 + -0.3
3,673,441 - -0.6
3,673,451 + -0.1
3,673,598 + -0.2
3,673,665 + -1.1
3,673,666 - +0.2
3,673,815 - -0.1
3,673,903 + CA264_15735 0.12 +0.1
3,673,904 - CA264_15735 0.12 +0.8
3,673,924 - CA264_15735 0.12 +0.7
3,673,936 + CA264_15735 0.13 -0.7
3,673,936 + CA264_15735 0.13 -0.4
3,674,035 + CA264_15735 0.15 -1.6
3,674,036 - CA264_15735 0.15 +0.3
3,674,071 + CA264_15735 0.16 -0.4
3,674,071 + CA264_15735 0.16 -0.3
3,674,071 + CA264_15735 0.16 -0.4
3,674,071 + CA264_15735 0.16 -0.7
3,674,071 + CA264_15735 0.16 -0.3
3,674,071 + CA264_15735 0.16 -1.5
3,674,072 - CA264_15735 0.16 -0.0
3,674,156 - CA264_15735 0.19 +0.8
3,674,242 + CA264_15735 0.21 -0.3
3,674,245 + CA264_15735 0.21 -0.6
3,674,245 + CA264_15735 0.21 -0.5
3,674,286 + CA264_15735 0.22 -0.8
3,674,368 - CA264_15735 0.24 -0.8
3,674,380 + CA264_15735 0.24 -0.7
3,674,391 - CA264_15735 0.25 -0.3
3,674,414 - CA264_15735 0.25 +0.2
3,674,515 + CA264_15735 0.28 -1.6
3,674,569 + CA264_15735 0.29 -1.1
3,674,569 + CA264_15735 0.29 -0.5
3,674,569 + CA264_15735 0.29 +0.0
3,674,577 + CA264_15735 0.30 -0.4
3,674,625 - CA264_15735 0.31 -0.3
3,674,723 + CA264_15735 0.34 -0.8
3,674,792 - CA264_15735 0.35 -0.4
3,674,821 + CA264_15735 0.36 -0.4
3,674,822 - CA264_15735 0.36 -0.6
3,674,850 + CA264_15735 0.37 +0.5
3,674,850 + CA264_15735 0.37 +0.4
3,674,851 - CA264_15735 0.37 +0.4
3,674,946 + CA264_15735 0.39 +1.6
3,674,974 + CA264_15735 0.40 -0.7
3,674,978 - CA264_15735 0.40 +1.1
3,675,087 + CA264_15735 0.43 -0.9
3,675,150 + CA264_15735 0.45 -0.2
3,675,158 - CA264_15735 0.45 -0.6
3,675,161 + CA264_15735 0.45 +1.5
3,675,161 + CA264_15735 0.45 +0.2
3,675,162 - CA264_15735 0.45 -0.7
3,675,290 + CA264_15735 0.49 +0.1
3,675,431 - CA264_15735 0.52 +1.8
3,675,431 - CA264_15735 0.52 +0.2
3,675,431 - CA264_15735 0.52 -0.1
3,675,622 + CA264_15735 0.57 -0.1
3,675,623 - CA264_15735 0.57 +0.1
3,675,691 + CA264_15735 0.59 -0.4
3,675,799 + CA264_15735 0.62 -0.3
3,675,980 - CA264_15735 0.67 -0.5
3,676,008 - CA264_15735 0.68 -0.1
3,676,019 - CA264_15735 0.68 -0.2
3,676,156 + CA264_15735 0.71 -0.3
3,676,157 - CA264_15735 0.71 +0.1
3,676,193 - CA264_15735 0.72 -0.2
3,676,219 + CA264_15735 0.73 -0.7
3,676,306 + CA264_15735 0.75 -0.1
3,676,306 + CA264_15735 0.75 +0.1
3,676,306 + CA264_15735 0.75 +0.1
3,676,307 - CA264_15735 0.75 -0.5
3,676,310 + CA264_15735 0.76 -0.3
3,676,310 + CA264_15735 0.76 -0.3
3,676,350 + CA264_15735 0.77 +0.5
3,676,350 + CA264_15735 0.77 +1.1
3,676,351 + CA264_15735 0.77 -0.4
3,676,351 - CA264_15735 0.77 +0.1
3,676,351 - CA264_15735 0.77 -1.1
3,676,354 + CA264_15735 0.77 +0.1
3,676,354 + CA264_15735 0.77 -0.4
3,676,417 + CA264_15735 0.78 -0.4
3,676,418 - CA264_15735 0.78 -0.5
3,676,448 - CA264_15735 0.79 +0.0
3,676,542 + CA264_15735 0.82 -0.2
3,676,543 - CA264_15735 0.82 +0.3
3,676,554 - CA264_15735 0.82 -0.9
3,676,554 - CA264_15735 0.82 +0.0
3,676,628 + CA264_15735 0.84 -0.1
3,676,629 - CA264_15735 0.84 -0.1
3,676,686 + CA264_15735 0.85 -0.4
3,676,751 - CA264_15735 0.87 +0.1
3,676,902 + -0.2
3,676,903 - -0.4
3,676,903 - +0.1
3,676,948 + -0.7
3,676,949 - -0.1
3,676,949 - +0.4
3,676,978 + +0.2
3,676,978 + -0.9
3,676,999 - -0.3
3,677,107 + -0.8
3,677,108 - -0.4
3,677,171 - -0.4
3,677,180 + -1.3
3,677,180 + +0.0
3,677,181 - +0.1
3,677,181 - +0.5
3,677,271 - +0.1
3,677,274 - -0.8
3,677,275 + -0.7
3,677,275 + -0.8
3,677,275 + -0.6
3,677,275 + -0.3
3,677,275 + -1.6
3,677,275 + -0.8
3,677,276 - -0.3
3,677,276 - -0.7
3,677,276 - -0.7
3,677,287 + +0.1
3,677,287 + -1.4
3,677,288 - +0.3
3,677,288 - -0.5
3,677,479 + -0.7
3,677,479 + -0.7
3,677,487 - -0.1
3,677,494 + -0.4
3,677,530 - -0.3
3,677,532 + -0.5
3,677,702 - -0.8
3,677,764 - +0.2
3,677,773 - CA264_15740 0.10 -0.5
3,677,781 - CA264_15740 0.11 +0.4
3,677,886 + CA264_15740 0.19 -0.9
3,677,898 + CA264_15740 0.20 -1.8
3,677,898 + CA264_15740 0.20 -0.4
3,677,898 + CA264_15740 0.20 -0.8
3,677,898 + CA264_15740 0.20 -0.7
3,677,982 - CA264_15740 0.27 -1.0
3,677,982 - CA264_15740 0.27 -2.0
3,677,993 + CA264_15740 0.28 -0.6
3,678,043 + CA264_15740 0.32 -1.2
3,678,044 - CA264_15740 0.32 -0.8
3,678,044 - CA264_15740 0.32 -1.8
3,678,184 + CA264_15740 0.43 -1.2

Or see this region's nucleotide sequence