Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15705

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15700 and CA264_15705 are separated by 99 nucleotidesCA264_15705 and CA264_15710 are separated by 153 nucleotidesCA264_15710 and CA264_15715 are separated by 3 nucleotides CA264_15700: CA264_15700 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase, at 3,665,386 to 3,666,675 _15700 CA264_15705: CA264_15705 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 3,666,775 to 3,667,317 _15705 CA264_15710: CA264_15710 - hypothetical protein, at 3,667,471 to 3,668,205 _15710 CA264_15715: CA264_15715 - GTPase HflX, at 3,668,209 to 3,669,396 _15715 Position (kb) 3666 3667 3668Strain fitness (log2 ratio) -1 0 1 2 3at 3666.754 kb on + strandat 3666.776 kb on + strandat 3667.325 kb on + strandat 3667.329 kb on + strandat 3667.329 kb on + strandat 3667.330 kb on - strandat 3667.356 kb on + strandat 3667.356 kb on + strandat 3667.356 kb on + strandat 3667.356 kb on + strandat 3667.359 kb on + strandat 3667.387 kb on + strandat 3667.403 kb on - strandat 3667.516 kb on - strandat 3667.516 kb on - strandat 3667.518 kb on - strandat 3667.520 kb on + strandat 3667.520 kb on + strandat 3667.521 kb on - strandat 3667.563 kb on + strand, within CA264_15710at 3667.564 kb on - strand, within CA264_15710at 3667.566 kb on + strand, within CA264_15710at 3667.662 kb on + strand, within CA264_15710at 3667.662 kb on + strand, within CA264_15710at 3667.666 kb on + strand, within CA264_15710at 3667.667 kb on - strand, within CA264_15710at 3667.667 kb on - strand, within CA264_15710at 3667.733 kb on + strand, within CA264_15710at 3667.734 kb on - strand, within CA264_15710at 3667.734 kb on - strand, within CA264_15710at 3667.737 kb on - strand, within CA264_15710at 3667.761 kb on - strand, within CA264_15710at 3667.793 kb on - strand, within CA264_15710at 3667.999 kb on + strand, within CA264_15710at 3668.073 kb on - strand, within CA264_15710at 3668.088 kb on - strand, within CA264_15710at 3668.088 kb on - strand, within CA264_15710at 3668.100 kb on - strand, within CA264_15710at 3668.183 kb on - strandat 3668.185 kb on - strandat 3668.271 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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3,666,754 + +0.2
3,666,776 + -0.2
3,667,325 + +0.3
3,667,329 + +3.1
3,667,329 + +0.8
3,667,330 - +2.6
3,667,356 + -0.4
3,667,356 + +0.5
3,667,356 + +1.5
3,667,356 + +2.5
3,667,359 + +0.9
3,667,387 + +0.7
3,667,403 - +0.2
3,667,516 - +0.8
3,667,516 - +0.5
3,667,518 - +0.6
3,667,520 + +0.6
3,667,520 + +1.5
3,667,521 - +1.2
3,667,563 + CA264_15710 0.13 +1.0
3,667,564 - CA264_15710 0.13 +0.7
3,667,566 + CA264_15710 0.13 +1.1
3,667,662 + CA264_15710 0.26 +1.4
3,667,662 + CA264_15710 0.26 +1.2
3,667,666 + CA264_15710 0.27 +0.7
3,667,667 - CA264_15710 0.27 +0.6
3,667,667 - CA264_15710 0.27 +0.7
3,667,733 + CA264_15710 0.36 +1.2
3,667,734 - CA264_15710 0.36 +0.1
3,667,734 - CA264_15710 0.36 +0.9
3,667,737 - CA264_15710 0.36 +0.5
3,667,761 - CA264_15710 0.39 +1.1
3,667,793 - CA264_15710 0.44 +0.1
3,667,999 + CA264_15710 0.72 +1.1
3,668,073 - CA264_15710 0.82 +0.6
3,668,088 - CA264_15710 0.84 +0.5
3,668,088 - CA264_15710 0.84 +0.7
3,668,100 - CA264_15710 0.86 +0.7
3,668,183 - -0.3
3,668,185 - +1.5
3,668,271 - +1.1

Or see this region's nucleotide sequence