Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14690

Experiment: m.b. A22 0.04 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_14680 and CA264_14685 are separated by 14 nucleotidesCA264_14685 and CA264_14690 are separated by 134 nucleotidesCA264_14690 and CA264_14695 are separated by 28 nucleotidesCA264_14695 and CA264_14700 are separated by 44 nucleotides CA264_14680: CA264_14680 - hypothetical protein, at 3,452,178 to 3,452,693 _14680 CA264_14685: CA264_14685 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 3,452,708 to 3,453,403 _14685 CA264_14690: CA264_14690 - peptidase S41, at 3,453,538 to 3,455,187 _14690 CA264_14695: CA264_14695 - ribonuclease P protein component, at 3,455,216 to 3,455,626 _14695 CA264_14700: CA264_14700 - 50S ribosomal protein L34, at 3,455,671 to 3,455,832 _14700 Position (kb) 3453 3454 3455 3456Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3452.679 kb on + strandat 3452.739 kb on + strandat 3452.755 kb on - strandat 3452.755 kb on - strandat 3453.417 kb on + strandat 3453.447 kb on - strandat 3453.532 kb on + strandat 3453.539 kb on + strandat 3453.555 kb on - strandat 3453.561 kb on + strandat 3453.563 kb on + strandat 3453.583 kb on + strandat 3453.633 kb on + strandat 3453.633 kb on + strandat 3453.634 kb on - strandat 3453.634 kb on - strandat 3453.634 kb on - strandat 3453.634 kb on - strandat 3453.634 kb on - strandat 3453.635 kb on + strandat 3453.635 kb on + strandat 3453.650 kb on + strandat 3453.654 kb on - strandat 3453.654 kb on - strandat 3453.726 kb on + strand, within CA264_14690at 3453.767 kb on - strand, within CA264_14690at 3453.767 kb on - strand, within CA264_14690at 3453.768 kb on + strand, within CA264_14690at 3453.769 kb on - strand, within CA264_14690at 3453.776 kb on + strand, within CA264_14690at 3453.827 kb on - strand, within CA264_14690at 3453.827 kb on - strand, within CA264_14690at 3453.827 kb on - strand, within CA264_14690at 3453.839 kb on + strand, within CA264_14690at 3453.939 kb on + strand, within CA264_14690at 3453.939 kb on + strand, within CA264_14690at 3453.939 kb on + strand, within CA264_14690at 3453.940 kb on - strand, within CA264_14690at 3453.940 kb on - strand, within CA264_14690at 3453.941 kb on + strand, within CA264_14690at 3453.954 kb on - strand, within CA264_14690at 3453.959 kb on + strand, within CA264_14690at 3453.966 kb on - strand, within CA264_14690at 3454.022 kb on - strand, within CA264_14690at 3454.050 kb on - strand, within CA264_14690at 3454.172 kb on + strand, within CA264_14690at 3454.175 kb on + strand, within CA264_14690at 3454.175 kb on + strand, within CA264_14690at 3454.190 kb on - strand, within CA264_14690at 3454.190 kb on - strand, within CA264_14690at 3454.207 kb on - strand, within CA264_14690at 3454.209 kb on - strand, within CA264_14690at 3454.280 kb on + strand, within CA264_14690at 3454.280 kb on + strand, within CA264_14690at 3454.281 kb on - strand, within CA264_14690at 3454.336 kb on - strand, within CA264_14690at 3454.623 kb on + strand, within CA264_14690at 3454.624 kb on - strand, within CA264_14690at 3454.628 kb on + strand, within CA264_14690at 3454.628 kb on + strand, within CA264_14690at 3454.629 kb on - strand, within CA264_14690at 3454.629 kb on - strand, within CA264_14690at 3454.629 kb on - strand, within CA264_14690at 3454.631 kb on + strand, within CA264_14690at 3454.632 kb on - strand, within CA264_14690at 3454.641 kb on + strand, within CA264_14690at 3454.770 kb on + strand, within CA264_14690at 3454.770 kb on + strand, within CA264_14690at 3454.801 kb on + strand, within CA264_14690at 3454.893 kb on + strand, within CA264_14690at 3454.894 kb on - strand, within CA264_14690at 3454.901 kb on - strand, within CA264_14690at 3454.910 kb on + strand, within CA264_14690at 3454.961 kb on + strand, within CA264_14690at 3455.042 kb on + strandat 3455.043 kb on - strandat 3455.043 kb on - strandat 3455.043 kb on - strandat 3455.043 kb on - strandat 3455.045 kb on + strandat 3455.046 kb on - strandat 3455.046 kb on - strandat 3455.053 kb on + strandat 3455.054 kb on - strandat 3455.054 kb on - strandat 3455.054 kb on - strandat 3455.106 kb on - strandat 3455.184 kb on - strandat 3455.187 kb on + strandat 3455.188 kb on - strandat 3455.188 kb on - strandat 3455.191 kb on - strandat 3455.238 kb on - strandat 3455.238 kb on - strandat 3455.639 kb on - strandat 3456.010 kb on - strandat 3456.010 kb on - strandat 3456.014 kb on + strandat 3456.015 kb on - strandat 3456.073 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
remove
3,452,679 + -0.6
3,452,739 + +0.7
3,452,755 - +1.7
3,452,755 - +1.4
3,453,417 + +0.6
3,453,447 - +0.4
3,453,532 + -0.7
3,453,539 + -0.5
3,453,555 - +1.0
3,453,561 + -0.2
3,453,563 + +0.0
3,453,583 + +0.3
3,453,633 + -0.6
3,453,633 + +0.2
3,453,634 - +0.9
3,453,634 - +0.7
3,453,634 - +1.1
3,453,634 - +1.3
3,453,634 - +1.0
3,453,635 + -0.6
3,453,635 + -0.4
3,453,650 + +0.6
3,453,654 - +0.8
3,453,654 - +0.5
3,453,726 + CA264_14690 0.11 +0.2
3,453,767 - CA264_14690 0.14 +1.4
3,453,767 - CA264_14690 0.14 +0.9
3,453,768 + CA264_14690 0.14 +0.2
3,453,769 - CA264_14690 0.14 +1.4
3,453,776 + CA264_14690 0.14 -1.3
3,453,827 - CA264_14690 0.18 +0.9
3,453,827 - CA264_14690 0.18 +1.3
3,453,827 - CA264_14690 0.18 +1.5
3,453,839 + CA264_14690 0.18 +0.6
3,453,939 + CA264_14690 0.24 +0.6
3,453,939 + CA264_14690 0.24 -0.1
3,453,939 + CA264_14690 0.24 +0.4
3,453,940 - CA264_14690 0.24 +0.7
3,453,940 - CA264_14690 0.24 +1.0
3,453,941 + CA264_14690 0.24 -1.3
3,453,954 - CA264_14690 0.25 +0.9
3,453,959 + CA264_14690 0.26 +0.3
3,453,966 - CA264_14690 0.26 -0.1
3,454,022 - CA264_14690 0.29 -1.0
3,454,050 - CA264_14690 0.31 +0.8
3,454,172 + CA264_14690 0.38 +0.0
3,454,175 + CA264_14690 0.39 -0.6
3,454,175 + CA264_14690 0.39 +0.4
3,454,190 - CA264_14690 0.40 +1.0
3,454,190 - CA264_14690 0.40 +0.6
3,454,207 - CA264_14690 0.41 +0.3
3,454,209 - CA264_14690 0.41 +1.0
3,454,280 + CA264_14690 0.45 -0.3
3,454,280 + CA264_14690 0.45 -0.4
3,454,281 - CA264_14690 0.45 +2.0
3,454,336 - CA264_14690 0.48 +0.7
3,454,623 + CA264_14690 0.66 +0.9
3,454,624 - CA264_14690 0.66 +0.9
3,454,628 + CA264_14690 0.66 +1.8
3,454,628 + CA264_14690 0.66 +1.8
3,454,629 - CA264_14690 0.66 +1.5
3,454,629 - CA264_14690 0.66 +0.3
3,454,629 - CA264_14690 0.66 +1.4
3,454,631 + CA264_14690 0.66 +1.0
3,454,632 - CA264_14690 0.66 -1.9
3,454,641 + CA264_14690 0.67 +1.0
3,454,770 + CA264_14690 0.75 +2.0
3,454,770 + CA264_14690 0.75 +2.4
3,454,801 + CA264_14690 0.77 +3.0
3,454,893 + CA264_14690 0.82 +2.6
3,454,894 - CA264_14690 0.82 +1.7
3,454,901 - CA264_14690 0.83 +0.6
3,454,910 + CA264_14690 0.83 +2.7
3,454,961 + CA264_14690 0.86 +2.3
3,455,042 + +2.8
3,455,043 - +0.9
3,455,043 - +0.9
3,455,043 - +1.2
3,455,043 - +1.7
3,455,045 + +2.8
3,455,046 - +1.0
3,455,046 - +1.7
3,455,053 + +2.5
3,455,054 - +0.7
3,455,054 - +0.5
3,455,054 - +1.1
3,455,106 - +0.9
3,455,184 - +1.1
3,455,187 + +2.2
3,455,188 - +0.8
3,455,188 - -0.9
3,455,191 - +0.1
3,455,238 - +2.2
3,455,238 - +0.0
3,455,639 - +1.7
3,456,010 - +0.5
3,456,010 - +0.7
3,456,014 + -0.9
3,456,015 - +0.4
3,456,073 - -0.1

Or see this region's nucleotide sequence