Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14625

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14615 and CA264_14620 are separated by 24 nucleotidesCA264_14620 and CA264_14625 overlap by 4 nucleotidesCA264_14625 and CA264_14630 are separated by 113 nucleotides CA264_14615: CA264_14615 - MBL fold hydrolase, at 3,438,002 to 3,438,637 _14615 CA264_14620: CA264_14620 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 3,438,662 to 3,439,369 _14620 CA264_14625: CA264_14625 - phosphoribosylformylglycinamidine synthase subunit PurS, at 3,439,366 to 3,439,617 _14625 CA264_14630: CA264_14630 - hypothetical protein, at 3,439,731 to 3,443,297 _14630 Position (kb) 3439 3440Strain fitness (log2 ratio) -1 0 1at 3438.530 kb on - strand, within CA264_14615at 3438.565 kb on - strand, within CA264_14615at 3438.619 kb on + strandat 3438.659 kb on + strandat 3438.660 kb on - strandat 3439.360 kb on + strandat 3439.360 kb on + strandat 3439.360 kb on + strandat 3439.469 kb on + strand, within CA264_14625at 3439.593 kb on + strandat 3439.631 kb on + strandat 3439.946 kb on + strandat 3439.957 kb on + strandat 3439.957 kb on + strandat 3440.056 kb on + strandat 3440.111 kb on + strand, within CA264_14630at 3440.111 kb on + strand, within CA264_14630at 3440.111 kb on + strand, within CA264_14630at 3440.196 kb on + strand, within CA264_14630at 3440.196 kb on + strand, within CA264_14630at 3440.226 kb on - strand, within CA264_14630at 3440.379 kb on + strand, within CA264_14630

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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3,438,530 - CA264_14615 0.83 -0.6
3,438,565 - CA264_14615 0.89 -1.0
3,438,619 + -1.6
3,438,659 + -1.7
3,438,660 - +0.5
3,439,360 + -0.1
3,439,360 + +0.5
3,439,360 + -0.3
3,439,469 + CA264_14625 0.41 -0.1
3,439,593 + -0.1
3,439,631 + +0.3
3,439,946 + -0.3
3,439,957 + +1.4
3,439,957 + -0.2
3,440,056 + +1.5
3,440,111 + CA264_14630 0.11 +0.0
3,440,111 + CA264_14630 0.11 -0.9
3,440,111 + CA264_14630 0.11 +0.1
3,440,196 + CA264_14630 0.13 -0.3
3,440,196 + CA264_14630 0.13 -1.4
3,440,226 - CA264_14630 0.14 -0.3
3,440,379 + CA264_14630 0.18 +0.1

Or see this region's nucleotide sequence