Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13215 and CA264_13220 are separated by 183 nucleotides CA264_13220 and CA264_13225 are separated by 31 nucleotides CA264_13225 and CA264_13230 are separated by 115 nucleotides
CA264_13215: CA264_13215 - hypothetical protein, at 3,081,255 to 3,081,674
_13215
CA264_13220: CA264_13220 - kazal domain protein, at 3,081,858 to 3,082,094
_13220
CA264_13225: CA264_13225 - cupin, at 3,082,126 to 3,082,497
_13225
CA264_13230: CA264_13230 - enoyl-ACP reductase, at 3,082,613 to 3,083,425
_13230
Position (kb)
3082
3083 Strain fitness (log2 ratio)
-1
0
1
2 at 3081.137 kb on + strand at 3081.138 kb on - strand at 3081.157 kb on - strand at 3081.169 kb on - strand at 3081.169 kb on - strand at 3081.173 kb on + strand at 3081.174 kb on - strand at 3081.176 kb on - strand at 3081.179 kb on + strand at 3081.180 kb on - strand at 3081.180 kb on - strand at 3081.181 kb on + strand at 3081.182 kb on - strand at 3081.189 kb on - strand at 3081.207 kb on - strand at 3081.217 kb on + strand at 3081.331 kb on + strand, within CA264_13215 at 3081.332 kb on - strand, within CA264_13215 at 3081.332 kb on - strand, within CA264_13215 at 3081.358 kb on + strand, within CA264_13215 at 3081.364 kb on - strand, within CA264_13215 at 3081.388 kb on + strand, within CA264_13215 at 3081.388 kb on + strand, within CA264_13215 at 3081.628 kb on - strand, within CA264_13215 at 3081.674 kb on + strand at 3081.675 kb on - strand at 3081.703 kb on + strand at 3081.782 kb on + strand at 3081.782 kb on + strand at 3081.782 kb on + strand at 3081.817 kb on + strand at 3081.817 kb on + strand at 3081.821 kb on + strand at 3081.822 kb on - strand at 3081.839 kb on - strand at 3081.839 kb on - strand at 3081.842 kb on + strand at 3081.843 kb on - strand at 3081.852 kb on + strand at 3081.853 kb on - strand at 3081.853 kb on - strand at 3081.855 kb on - strand at 3081.988 kb on - strand, within CA264_13220 at 3082.020 kb on + strand, within CA264_13220 at 3082.055 kb on + strand, within CA264_13220 at 3082.065 kb on - strand, within CA264_13220 at 3082.111 kb on + strand at 3082.125 kb on + strand at 3082.193 kb on + strand, within CA264_13225 at 3082.379 kb on + strand, within CA264_13225 at 3082.379 kb on + strand, within CA264_13225 at 3082.380 kb on - strand, within CA264_13225 at 3082.380 kb on - strand, within CA264_13225 at 3082.383 kb on + strand, within CA264_13225 at 3082.384 kb on - strand, within CA264_13225 at 3082.438 kb on + strand, within CA264_13225 at 3082.438 kb on + strand, within CA264_13225 at 3082.447 kb on - strand, within CA264_13225 at 3082.550 kb on - strand at 3082.615 kb on - strand at 3082.615 kb on - strand at 3082.619 kb on - strand at 3083.454 kb on - strand at 3083.493 kb on - strand at 3083.493 kb on - strand at 3083.494 kb on + strand at 3083.494 kb on + strand at 3083.495 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 3,081,137 + +0.1 3,081,138 - +0.9 3,081,157 - -0.1 3,081,169 - -0.4 3,081,169 - +0.8 3,081,173 + -1.3 3,081,174 - +0.9 3,081,176 - +1.0 3,081,179 + +0.6 3,081,180 - +0.3 3,081,180 - +0.5 3,081,181 + -0.9 3,081,182 - -0.0 3,081,189 - -0.0 3,081,207 - +0.9 3,081,217 + +0.4 3,081,331 + CA264_13215 0.18 +0.5 3,081,332 - CA264_13215 0.18 +0.9 3,081,332 - CA264_13215 0.18 +0.1 3,081,358 + CA264_13215 0.25 +0.4 3,081,364 - CA264_13215 0.26 +0.1 3,081,388 + CA264_13215 0.32 +1.1 3,081,388 + CA264_13215 0.32 +0.4 3,081,628 - CA264_13215 0.89 +0.8 3,081,674 + +0.8 3,081,675 - +0.1 3,081,703 + +1.0 3,081,782 + +1.6 3,081,782 + +1.0 3,081,782 + +0.7 3,081,817 + +0.3 3,081,817 + +1.6 3,081,821 + +0.2 3,081,822 - -0.7 3,081,839 - +0.3 3,081,839 - -0.0 3,081,842 + +0.6 3,081,843 - -1.2 3,081,852 + +0.1 3,081,853 - -0.7 3,081,853 - -1.1 3,081,855 - -0.9 3,081,988 - CA264_13220 0.55 -0.0 3,082,020 + CA264_13220 0.68 +0.1 3,082,055 + CA264_13220 0.83 +0.2 3,082,065 - CA264_13220 0.87 +0.3 3,082,111 + -0.4 3,082,125 + -0.6 3,082,193 + CA264_13225 0.18 -1.6 3,082,379 + CA264_13225 0.68 +0.4 3,082,379 + CA264_13225 0.68 -0.2 3,082,380 - CA264_13225 0.68 -1.2 3,082,380 - CA264_13225 0.68 +1.6 3,082,383 + CA264_13225 0.69 +1.2 3,082,384 - CA264_13225 0.69 +0.1 3,082,438 + CA264_13225 0.84 +1.9 3,082,438 + CA264_13225 0.84 +1.0 3,082,447 - CA264_13225 0.86 -0.0 3,082,550 - -1.0 3,082,615 - +1.3 3,082,615 - +0.8 3,082,619 - +0.2 3,083,454 - +0.2 3,083,493 - -1.7 3,083,493 - +0.0 3,083,494 + +1.1 3,083,494 + -0.4 3,083,495 - +0.0
Or see this region's nucleotide sequence