Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13085

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13080 and CA264_13085 are separated by 370 nucleotidesCA264_13085 and CA264_13090 are separated by 92 nucleotides CA264_13080: CA264_13080 - aminodeoxychorismate lyase, at 3,049,506 to 3,050,582 _13080 CA264_13085: CA264_13085 - methylmalonyl-CoA carboxyltransferase, at 3,050,953 to 3,052,512 _13085 CA264_13090: CA264_13090 - peptidase M42, at 3,052,605 to 3,053,675 _13090 Position (kb) 3050 3051 3052 3053Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3049.981 kb on + strand, within CA264_13080at 3050.587 kb on + strandat 3050.587 kb on + strandat 3050.587 kb on + strandat 3050.587 kb on + strandat 3050.588 kb on - strandat 3050.607 kb on + strandat 3050.608 kb on - strandat 3050.608 kb on - strandat 3050.608 kb on - strandat 3050.608 kb on - strandat 3050.611 kb on + strandat 3050.611 kb on + strandat 3050.611 kb on + strandat 3050.611 kb on + strandat 3050.612 kb on - strandat 3050.612 kb on - strandat 3050.612 kb on - strandat 3050.661 kb on + strandat 3050.665 kb on + strandat 3050.853 kb on + strandat 3050.853 kb on + strandat 3050.854 kb on - strandat 3050.856 kb on - strandat 3050.856 kb on - strandat 3050.856 kb on - strandat 3050.903 kb on + strandat 3050.924 kb on + strandat 3051.081 kb on + strandat 3051.081 kb on + strandat 3051.119 kb on + strand, within CA264_13085at 3051.119 kb on + strand, within CA264_13085at 3051.120 kb on - strand, within CA264_13085at 3051.123 kb on + strand, within CA264_13085at 3051.124 kb on - strand, within CA264_13085at 3051.124 kb on - strand, within CA264_13085at 3051.169 kb on + strand, within CA264_13085at 3051.169 kb on + strand, within CA264_13085at 3051.227 kb on - strand, within CA264_13085at 3051.483 kb on - strand, within CA264_13085at 3051.484 kb on + strand, within CA264_13085at 3051.484 kb on + strand, within CA264_13085at 3051.508 kb on - strand, within CA264_13085at 3051.532 kb on + strand, within CA264_13085at 3051.533 kb on - strand, within CA264_13085at 3051.533 kb on - strand, within CA264_13085at 3051.533 kb on - strand, within CA264_13085at 3051.533 kb on - strand, within CA264_13085at 3051.534 kb on + strand, within CA264_13085at 3051.534 kb on + strand, within CA264_13085at 3051.534 kb on + strand, within CA264_13085at 3051.535 kb on - strand, within CA264_13085at 3051.586 kb on - strand, within CA264_13085at 3051.677 kb on - strand, within CA264_13085at 3051.698 kb on - strand, within CA264_13085at 3051.809 kb on - strand, within CA264_13085at 3051.928 kb on - strand, within CA264_13085at 3051.932 kb on + strand, within CA264_13085at 3051.933 kb on - strand, within CA264_13085at 3051.933 kb on - strand, within CA264_13085at 3051.933 kb on - strand, within CA264_13085at 3052.020 kb on + strand, within CA264_13085at 3052.020 kb on + strand, within CA264_13085at 3052.171 kb on + strand, within CA264_13085at 3052.287 kb on + strand, within CA264_13085at 3052.372 kb on + strandat 3052.449 kb on + strandat 3052.450 kb on - strandat 3052.486 kb on - strandat 3052.516 kb on + strandat 3052.520 kb on + strandat 3052.520 kb on + strandat 3052.521 kb on - strandat 3052.521 kb on - strandat 3052.527 kb on + strandat 3052.571 kb on - strandat 3052.571 kb on - strandat 3052.698 kb on + strandat 3052.710 kb on + strandat 3052.737 kb on + strand, within CA264_13090at 3052.776 kb on + strand, within CA264_13090at 3052.778 kb on + strand, within CA264_13090at 3052.778 kb on + strand, within CA264_13090at 3052.779 kb on - strand, within CA264_13090at 3052.783 kb on + strand, within CA264_13090at 3052.784 kb on - strand, within CA264_13090at 3052.784 kb on - strand, within CA264_13090at 3052.784 kb on - strand, within CA264_13090at 3052.828 kb on - strand, within CA264_13090at 3052.828 kb on - strand, within CA264_13090at 3052.845 kb on + strand, within CA264_13090at 3052.846 kb on - strand, within CA264_13090at 3053.042 kb on - strand, within CA264_13090at 3053.042 kb on - strand, within CA264_13090at 3053.071 kb on + strand, within CA264_13090at 3053.112 kb on + strand, within CA264_13090at 3053.112 kb on + strand, within CA264_13090at 3053.112 kb on + strand, within CA264_13090at 3053.115 kb on + strand, within CA264_13090at 3053.115 kb on + strand, within CA264_13090at 3053.116 kb on - strand, within CA264_13090at 3053.116 kb on - strand, within CA264_13090at 3053.116 kb on - strand, within CA264_13090at 3053.116 kb on - strand, within CA264_13090at 3053.214 kb on + strand, within CA264_13090at 3053.215 kb on - strand, within CA264_13090at 3053.215 kb on - strand, within CA264_13090at 3053.222 kb on - strand, within CA264_13090at 3053.308 kb on + strand, within CA264_13090

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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3,049,981 + CA264_13080 0.44 -1.3
3,050,587 + -1.9
3,050,587 + -2.3
3,050,587 + -0.4
3,050,587 + -1.4
3,050,588 - -0.5
3,050,607 + -3.1
3,050,608 - -3.0
3,050,608 - -3.5
3,050,608 - +0.7
3,050,608 - -1.1
3,050,611 + -2.7
3,050,611 + -0.9
3,050,611 + -1.7
3,050,611 + +0.9
3,050,612 - -0.5
3,050,612 - -0.9
3,050,612 - -1.5
3,050,661 + -0.2
3,050,665 + -1.8
3,050,853 + -1.1
3,050,853 + -1.6
3,050,854 - -3.1
3,050,856 - -4.3
3,050,856 - -0.3
3,050,856 - -2.5
3,050,903 + -3.1
3,050,924 + -1.7
3,051,081 + +1.1
3,051,081 + +1.3
3,051,119 + CA264_13085 0.11 +1.6
3,051,119 + CA264_13085 0.11 +0.1
3,051,120 - CA264_13085 0.11 -0.2
3,051,123 + CA264_13085 0.11 -0.4
3,051,124 - CA264_13085 0.11 +0.3
3,051,124 - CA264_13085 0.11 -1.1
3,051,169 + CA264_13085 0.14 -0.0
3,051,169 + CA264_13085 0.14 +0.6
3,051,227 - CA264_13085 0.18 -0.5
3,051,483 - CA264_13085 0.34 -1.1
3,051,484 + CA264_13085 0.34 +0.4
3,051,484 + CA264_13085 0.34 +0.8
3,051,508 - CA264_13085 0.36 -0.4
3,051,532 + CA264_13085 0.37 -0.3
3,051,533 - CA264_13085 0.37 +0.3
3,051,533 - CA264_13085 0.37 +0.2
3,051,533 - CA264_13085 0.37 -1.5
3,051,533 - CA264_13085 0.37 +0.9
3,051,534 + CA264_13085 0.37 +1.1
3,051,534 + CA264_13085 0.37 +0.1
3,051,534 + CA264_13085 0.37 -0.4
3,051,535 - CA264_13085 0.37 -1.2
3,051,586 - CA264_13085 0.41 -0.2
3,051,677 - CA264_13085 0.46 -0.2
3,051,698 - CA264_13085 0.48 -0.7
3,051,809 - CA264_13085 0.55 -0.1
3,051,928 - CA264_13085 0.62 +0.1
3,051,932 + CA264_13085 0.63 +1.7
3,051,933 - CA264_13085 0.63 -0.3
3,051,933 - CA264_13085 0.63 +0.9
3,051,933 - CA264_13085 0.63 -2.2
3,052,020 + CA264_13085 0.68 +0.5
3,052,020 + CA264_13085 0.68 +0.2
3,052,171 + CA264_13085 0.78 -0.3
3,052,287 + CA264_13085 0.86 +0.0
3,052,372 + -0.4
3,052,449 + -0.1
3,052,450 - +0.7
3,052,486 - -0.4
3,052,516 + -0.3
3,052,520 + +0.4
3,052,520 + -0.5
3,052,521 - -1.1
3,052,521 - +0.3
3,052,527 + +0.7
3,052,571 - +0.0
3,052,571 - -0.1
3,052,698 + -0.1
3,052,710 + +0.3
3,052,737 + CA264_13090 0.12 +0.6
3,052,776 + CA264_13090 0.16 +1.7
3,052,778 + CA264_13090 0.16 +0.3
3,052,778 + CA264_13090 0.16 -0.4
3,052,779 - CA264_13090 0.16 -0.0
3,052,783 + CA264_13090 0.17 -0.1
3,052,784 - CA264_13090 0.17 -0.8
3,052,784 - CA264_13090 0.17 +0.2
3,052,784 - CA264_13090 0.17 +0.3
3,052,828 - CA264_13090 0.21 +1.0
3,052,828 - CA264_13090 0.21 +0.8
3,052,845 + CA264_13090 0.22 +0.3
3,052,846 - CA264_13090 0.23 +0.9
3,053,042 - CA264_13090 0.41 -0.5
3,053,042 - CA264_13090 0.41 -0.5
3,053,071 + CA264_13090 0.44 +0.4
3,053,112 + CA264_13090 0.47 -0.3
3,053,112 + CA264_13090 0.47 +0.6
3,053,112 + CA264_13090 0.47 -0.8
3,053,115 + CA264_13090 0.48 +1.1
3,053,115 + CA264_13090 0.48 +0.9
3,053,116 - CA264_13090 0.48 -0.3
3,053,116 - CA264_13090 0.48 +0.2
3,053,116 - CA264_13090 0.48 +0.3
3,053,116 - CA264_13090 0.48 -0.0
3,053,214 + CA264_13090 0.57 +0.9
3,053,215 - CA264_13090 0.57 +0.2
3,053,215 - CA264_13090 0.57 -0.4
3,053,222 - CA264_13090 0.58 +0.7
3,053,308 + CA264_13090 0.66 +0.8

Or see this region's nucleotide sequence