Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13030

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13025 and CA264_13030 are separated by 297 nucleotidesCA264_13030 and CA264_13035 are separated by 193 nucleotides CA264_13025: CA264_13025 - hypothetical protein, at 3,034,496 to 3,035,083 _13025 CA264_13030: CA264_13030 - cysteine methyltransferase, at 3,035,381 to 3,035,722 _13030 CA264_13035: CA264_13035 - MexH family multidrug efflux RND transporter periplasmic adaptor subunit, at 3,035,916 to 3,036,998 _13035 Position (kb) 3035 3036Strain fitness (log2 ratio) -3 -2 -1 0 1at 3034.408 kb on - strandat 3034.479 kb on + strandat 3034.480 kb on - strandat 3034.480 kb on - strandat 3034.480 kb on - strandat 3034.509 kb on + strandat 3034.744 kb on - strand, within CA264_13025at 3034.826 kb on + strand, within CA264_13025at 3034.827 kb on - strand, within CA264_13025at 3034.854 kb on + strand, within CA264_13025at 3034.959 kb on - strand, within CA264_13025at 3035.048 kb on + strandat 3035.049 kb on - strandat 3035.049 kb on - strandat 3035.059 kb on - strandat 3035.059 kb on - strandat 3035.074 kb on + strandat 3035.081 kb on + strandat 3035.082 kb on - strandat 3035.130 kb on + strandat 3035.145 kb on + strandat 3035.148 kb on - strandat 3035.224 kb on + strandat 3035.273 kb on - strandat 3035.273 kb on - strandat 3035.273 kb on - strandat 3035.318 kb on - strandat 3035.361 kb on + strandat 3035.361 kb on + strandat 3035.362 kb on - strandat 3035.615 kb on + strand, within CA264_13030at 3035.770 kb on + strandat 3035.771 kb on - strandat 3035.790 kb on + strandat 3035.790 kb on + strandat 3035.790 kb on + strandat 3035.813 kb on - strandat 3035.828 kb on + strandat 3035.829 kb on - strandat 3035.835 kb on - strandat 3035.840 kb on + strandat 3035.840 kb on + strandat 3035.841 kb on - strandat 3035.842 kb on + strandat 3035.842 kb on + strandat 3036.185 kb on + strand, within CA264_13035at 3036.214 kb on + strand, within CA264_13035at 3036.215 kb on - strand, within CA264_13035at 3036.321 kb on + strand, within CA264_13035at 3036.321 kb on + strand, within CA264_13035at 3036.322 kb on - strand, within CA264_13035at 3036.322 kb on - strand, within CA264_13035at 3036.339 kb on + strand, within CA264_13035at 3036.340 kb on - strand, within CA264_13035at 3036.414 kb on + strand, within CA264_13035at 3036.415 kb on - strand, within CA264_13035at 3036.415 kb on - strand, within CA264_13035at 3036.471 kb on + strand, within CA264_13035at 3036.471 kb on + strand, within CA264_13035at 3036.471 kb on + strand, within CA264_13035at 3036.471 kb on + strand, within CA264_13035at 3036.471 kb on + strand, within CA264_13035at 3036.472 kb on - strand, within CA264_13035at 3036.580 kb on + strand, within CA264_13035at 3036.581 kb on - strand, within CA264_13035at 3036.627 kb on + strand, within CA264_13035at 3036.632 kb on + strand, within CA264_13035at 3036.673 kb on + strand, within CA264_13035at 3036.706 kb on + strand, within CA264_13035at 3036.707 kb on - strand, within CA264_13035

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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3,034,408 - -0.6
3,034,479 + -0.3
3,034,480 - -0.3
3,034,480 - -0.2
3,034,480 - -0.4
3,034,509 + +0.0
3,034,744 - CA264_13025 0.42 +0.6
3,034,826 + CA264_13025 0.56 -1.1
3,034,827 - CA264_13025 0.56 +0.5
3,034,854 + CA264_13025 0.61 -0.4
3,034,959 - CA264_13025 0.79 +0.1
3,035,048 + -0.2
3,035,049 - -0.8
3,035,049 - -0.5
3,035,059 - -0.0
3,035,059 - -1.2
3,035,074 + +0.4
3,035,081 + +0.1
3,035,082 - -0.7
3,035,130 + -1.3
3,035,145 + -0.1
3,035,148 - -0.4
3,035,224 + -2.8
3,035,273 - -0.3
3,035,273 - +0.1
3,035,273 - +0.2
3,035,318 - +1.2
3,035,361 + -0.6
3,035,361 + +0.9
3,035,362 - -0.4
3,035,615 + CA264_13030 0.68 -1.1
3,035,770 + -0.8
3,035,771 - -0.1
3,035,790 + -0.4
3,035,790 + -0.8
3,035,790 + -0.2
3,035,813 - +0.0
3,035,828 + -1.1
3,035,829 - -0.2
3,035,835 - +0.1
3,035,840 + +0.3
3,035,840 + -0.3
3,035,841 - -0.9
3,035,842 + -0.9
3,035,842 + -0.8
3,036,185 + CA264_13035 0.25 -0.7
3,036,214 + CA264_13035 0.28 -1.0
3,036,215 - CA264_13035 0.28 +0.7
3,036,321 + CA264_13035 0.37 -1.4
3,036,321 + CA264_13035 0.37 -1.2
3,036,322 - CA264_13035 0.37 -0.5
3,036,322 - CA264_13035 0.37 -0.7
3,036,339 + CA264_13035 0.39 +0.8
3,036,340 - CA264_13035 0.39 -0.7
3,036,414 + CA264_13035 0.46 +0.7
3,036,415 - CA264_13035 0.46 -2.4
3,036,415 - CA264_13035 0.46 -0.0
3,036,471 + CA264_13035 0.51 -0.5
3,036,471 + CA264_13035 0.51 +0.3
3,036,471 + CA264_13035 0.51 +0.3
3,036,471 + CA264_13035 0.51 +0.4
3,036,471 + CA264_13035 0.51 -0.1
3,036,472 - CA264_13035 0.51 -0.2
3,036,580 + CA264_13035 0.61 +0.4
3,036,581 - CA264_13035 0.61 -0.7
3,036,627 + CA264_13035 0.66 -0.8
3,036,632 + CA264_13035 0.66 -0.9
3,036,673 + CA264_13035 0.70 -0.3
3,036,706 + CA264_13035 0.73 -1.3
3,036,707 - CA264_13035 0.73 -1.8

Or see this region's nucleotide sequence