Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12145

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12140 and CA264_12145 are separated by 37 nucleotidesCA264_12145 and CA264_12150 are separated by 83 nucleotides CA264_12140: CA264_12140 - NAD-dependent dehydratase, at 2,830,777 to 2,832,837 _12140 CA264_12145: CA264_12145 - nucleoside-diphosphate-sugar epimerase, at 2,832,875 to 2,833,993 _12145 CA264_12150: CA264_12150 - hypothetical protein, at 2,834,077 to 2,834,874 _12150 Position (kb) 2832 2833 2834Strain fitness (log2 ratio) -3 -2 -1 0 1at 2831.881 kb on + strand, within CA264_12140at 2831.897 kb on + strand, within CA264_12140at 2832.282 kb on - strand, within CA264_12140at 2832.440 kb on + strand, within CA264_12140at 2832.579 kb on + strand, within CA264_12140at 2832.579 kb on + strand, within CA264_12140at 2832.596 kb on - strand, within CA264_12140at 2832.617 kb on - strand, within CA264_12140at 2832.781 kb on + strandat 2833.140 kb on + strand, within CA264_12145at 2833.140 kb on + strand, within CA264_12145at 2833.323 kb on + strand, within CA264_12145at 2833.446 kb on + strand, within CA264_12145at 2833.596 kb on + strand, within CA264_12145at 2833.768 kb on - strand, within CA264_12145at 2833.768 kb on - strand, within CA264_12145at 2833.993 kb on + strandat 2834.791 kb on + strand, within CA264_12150at 2834.818 kb on - strandat 2834.839 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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2,831,881 + CA264_12140 0.54 -3.0
2,831,897 + CA264_12140 0.54 -1.8
2,832,282 - CA264_12140 0.73 +0.8
2,832,440 + CA264_12140 0.81 -2.0
2,832,579 + CA264_12140 0.87 -0.8
2,832,579 + CA264_12140 0.87 -1.2
2,832,596 - CA264_12140 0.88 -1.0
2,832,617 - CA264_12140 0.89 -2.8
2,832,781 + -3.0
2,833,140 + CA264_12145 0.24 -2.3
2,833,140 + CA264_12145 0.24 -2.0
2,833,323 + CA264_12145 0.40 -1.6
2,833,446 + CA264_12145 0.51 -0.0
2,833,596 + CA264_12145 0.64 -1.7
2,833,768 - CA264_12145 0.80 -1.2
2,833,768 - CA264_12145 0.80 +0.4
2,833,993 + -1.6
2,834,791 + CA264_12150 0.89 -1.5
2,834,818 - -2.4
2,834,839 - -1.2

Or see this region's nucleotide sequence