Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11405

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11400 and CA264_11405 are separated by 93 nucleotidesCA264_11405 and CA264_11410 are separated by 57 nucleotidesCA264_11410 and CA264_11415 overlap by 8 nucleotides CA264_11400: CA264_11400 - alkaline phosphatase, at 2,641,426 to 2,643,105 _11400 CA264_11405: CA264_11405 - glycerophosphodiester phosphodiesterase, at 2,643,199 to 2,644,098 _11405 CA264_11410: CA264_11410 - histidine phosphatase family protein, at 2,644,156 to 2,644,755 _11410 CA264_11415: CA264_11415 - carbohydrate kinase, at 2,644,748 to 2,646,208 _11415 Position (kb) 2643 2644 2645Strain fitness (log2 ratio) -2 -1 0 1 2at 2642.202 kb on + strand, within CA264_11400at 2642.262 kb on + strand, within CA264_11400at 2642.272 kb on + strand, within CA264_11400at 2642.273 kb on - strand, within CA264_11400at 2642.280 kb on - strand, within CA264_11400at 2642.313 kb on + strand, within CA264_11400at 2642.313 kb on + strand, within CA264_11400at 2642.314 kb on - strand, within CA264_11400at 2642.314 kb on - strand, within CA264_11400at 2642.381 kb on + strand, within CA264_11400at 2642.399 kb on - strand, within CA264_11400at 2642.399 kb on - strand, within CA264_11400at 2642.423 kb on + strand, within CA264_11400at 2642.424 kb on - strand, within CA264_11400at 2642.448 kb on + strand, within CA264_11400at 2642.479 kb on + strand, within CA264_11400at 2642.481 kb on + strand, within CA264_11400at 2642.482 kb on - strand, within CA264_11400at 2642.482 kb on - strand, within CA264_11400at 2642.482 kb on - strand, within CA264_11400at 2642.483 kb on + strand, within CA264_11400at 2642.483 kb on + strand, within CA264_11400at 2642.483 kb on + strand, within CA264_11400at 2642.484 kb on - strand, within CA264_11400at 2642.486 kb on + strand, within CA264_11400at 2642.486 kb on + strand, within CA264_11400at 2642.487 kb on - strand, within CA264_11400at 2642.529 kb on - strand, within CA264_11400at 2642.593 kb on + strand, within CA264_11400at 2642.594 kb on - strand, within CA264_11400at 2642.613 kb on + strand, within CA264_11400at 2642.613 kb on + strand, within CA264_11400at 2642.618 kb on - strand, within CA264_11400at 2642.624 kb on - strand, within CA264_11400at 2642.624 kb on - strand, within CA264_11400at 2642.692 kb on + strand, within CA264_11400at 2642.709 kb on + strand, within CA264_11400at 2642.723 kb on + strand, within CA264_11400at 2642.751 kb on - strand, within CA264_11400at 2642.787 kb on + strand, within CA264_11400at 2642.837 kb on + strand, within CA264_11400at 2642.843 kb on + strand, within CA264_11400at 2642.860 kb on - strand, within CA264_11400at 2642.861 kb on + strand, within CA264_11400at 2642.861 kb on + strand, within CA264_11400at 2642.862 kb on - strand, within CA264_11400at 2642.862 kb on - strand, within CA264_11400at 2642.865 kb on - strand, within CA264_11400at 2642.947 kb on + strandat 2642.948 kb on - strandat 2642.952 kb on + strandat 2642.982 kb on + strandat 2642.982 kb on + strandat 2642.983 kb on - strandat 2642.983 kb on - strandat 2642.983 kb on - strandat 2642.984 kb on + strandat 2643.079 kb on - strandat 2643.098 kb on - strandat 2643.106 kb on - strandat 2643.106 kb on - strandat 2643.108 kb on + strandat 2643.108 kb on + strandat 2643.109 kb on - strandat 2643.236 kb on + strandat 2643.236 kb on + strandat 2643.353 kb on + strand, within CA264_11405at 2643.353 kb on + strand, within CA264_11405at 2643.353 kb on + strand, within CA264_11405at 2643.353 kb on + strand, within CA264_11405at 2643.353 kb on + strand, within CA264_11405at 2643.354 kb on - strand, within CA264_11405at 2643.354 kb on - strand, within CA264_11405at 2643.407 kb on + strand, within CA264_11405at 2643.407 kb on + strand, within CA264_11405at 2643.408 kb on - strand, within CA264_11405at 2643.408 kb on - strand, within CA264_11405at 2643.408 kb on - strand, within CA264_11405at 2643.408 kb on - strand, within CA264_11405at 2643.447 kb on - strand, within CA264_11405at 2643.486 kb on - strand, within CA264_11405at 2643.551 kb on + strand, within CA264_11405at 2643.594 kb on - strand, within CA264_11405at 2643.691 kb on + strand, within CA264_11405at 2643.692 kb on - strand, within CA264_11405at 2643.694 kb on + strand, within CA264_11405at 2643.779 kb on + strand, within CA264_11405at 2643.811 kb on - strand, within CA264_11405at 2643.871 kb on + strand, within CA264_11405at 2643.903 kb on + strand, within CA264_11405at 2643.903 kb on + strand, within CA264_11405at 2643.904 kb on - strand, within CA264_11405at 2643.925 kb on - strand, within CA264_11405at 2643.989 kb on + strand, within CA264_11405at 2643.999 kb on - strand, within CA264_11405at 2644.044 kb on + strandat 2644.058 kb on - strandat 2644.105 kb on + strandat 2644.132 kb on + strandat 2644.133 kb on - strandat 2644.209 kb on + strandat 2644.210 kb on - strandat 2644.286 kb on + strand, within CA264_11410at 2644.287 kb on - strand, within CA264_11410at 2644.321 kb on + strand, within CA264_11410at 2644.327 kb on - strand, within CA264_11410at 2644.378 kb on + strand, within CA264_11410at 2644.378 kb on + strand, within CA264_11410at 2644.378 kb on + strand, within CA264_11410at 2644.381 kb on - strand, within CA264_11410at 2644.381 kb on - strand, within CA264_11410at 2644.562 kb on + strand, within CA264_11410at 2644.563 kb on - strand, within CA264_11410at 2644.563 kb on - strand, within CA264_11410at 2644.598 kb on + strand, within CA264_11410at 2644.598 kb on + strand, within CA264_11410at 2644.599 kb on - strand, within CA264_11410at 2644.600 kb on + strand, within CA264_11410at 2644.600 kb on + strand, within CA264_11410at 2644.600 kb on + strand, within CA264_11410at 2644.600 kb on + strand, within CA264_11410at 2644.601 kb on - strand, within CA264_11410at 2644.601 kb on - strand, within CA264_11410at 2644.601 kb on - strand, within CA264_11410at 2644.601 kb on - strand, within CA264_11410at 2644.694 kb on + strand, within CA264_11410at 2644.695 kb on - strand, within CA264_11410at 2644.695 kb on - strand, within CA264_11410at 2644.739 kb on - strandat 2644.755 kb on + strandat 2644.762 kb on - strandat 2644.772 kb on + strandat 2644.772 kb on + strandat 2644.772 kb on + strandat 2644.773 kb on - strandat 2644.775 kb on - strandat 2644.775 kb on - strandat 2644.775 kb on - strandat 2644.776 kb on + strandat 2644.792 kb on + strandat 2644.866 kb on - strandat 2644.892 kb on + strandat 2644.903 kb on + strand, within CA264_11415at 2644.903 kb on + strand, within CA264_11415at 2644.903 kb on + strand, within CA264_11415at 2644.904 kb on - strand, within CA264_11415at 2644.904 kb on - strand, within CA264_11415at 2644.905 kb on + strand, within CA264_11415at 2644.905 kb on + strand, within CA264_11415at 2644.925 kb on + strand, within CA264_11415at 2644.926 kb on - strand, within CA264_11415at 2645.041 kb on - strand, within CA264_11415at 2645.066 kb on + strand, within CA264_11415

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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2,642,202 + CA264_11400 0.46 +0.2
2,642,262 + CA264_11400 0.50 -0.5
2,642,272 + CA264_11400 0.50 +0.1
2,642,273 - CA264_11400 0.50 +0.6
2,642,280 - CA264_11400 0.51 -0.0
2,642,313 + CA264_11400 0.53 +0.2
2,642,313 + CA264_11400 0.53 -0.2
2,642,314 - CA264_11400 0.53 +0.4
2,642,314 - CA264_11400 0.53 +0.2
2,642,381 + CA264_11400 0.57 -0.1
2,642,399 - CA264_11400 0.58 -0.6
2,642,399 - CA264_11400 0.58 +0.2
2,642,423 + CA264_11400 0.59 -0.4
2,642,424 - CA264_11400 0.59 +0.6
2,642,448 + CA264_11400 0.61 +0.7
2,642,479 + CA264_11400 0.63 -0.2
2,642,481 + CA264_11400 0.63 -0.3
2,642,482 - CA264_11400 0.63 +0.2
2,642,482 - CA264_11400 0.63 +0.1
2,642,482 - CA264_11400 0.63 +0.1
2,642,483 + CA264_11400 0.63 -0.6
2,642,483 + CA264_11400 0.63 -0.1
2,642,483 + CA264_11400 0.63 +0.6
2,642,484 - CA264_11400 0.63 -0.6
2,642,486 + CA264_11400 0.63 -0.1
2,642,486 + CA264_11400 0.63 +0.5
2,642,487 - CA264_11400 0.63 +0.3
2,642,529 - CA264_11400 0.66 +0.2
2,642,593 + CA264_11400 0.69 -0.5
2,642,594 - CA264_11400 0.70 +1.2
2,642,613 + CA264_11400 0.71 +0.3
2,642,613 + CA264_11400 0.71 +0.0
2,642,618 - CA264_11400 0.71 -0.4
2,642,624 - CA264_11400 0.71 -1.3
2,642,624 - CA264_11400 0.71 +1.7
2,642,692 + CA264_11400 0.75 +0.5
2,642,709 + CA264_11400 0.76 +0.9
2,642,723 + CA264_11400 0.77 -0.7
2,642,751 - CA264_11400 0.79 -0.2
2,642,787 + CA264_11400 0.81 -0.0
2,642,837 + CA264_11400 0.84 -1.3
2,642,843 + CA264_11400 0.84 -2.7
2,642,860 - CA264_11400 0.85 +0.1
2,642,861 + CA264_11400 0.85 +1.3
2,642,861 + CA264_11400 0.85 -0.0
2,642,862 - CA264_11400 0.85 +1.9
2,642,862 - CA264_11400 0.85 -1.1
2,642,865 - CA264_11400 0.86 +1.5
2,642,947 + +0.4
2,642,948 - +0.9
2,642,952 + +0.4
2,642,982 + -0.4
2,642,982 + +0.0
2,642,983 - +0.4
2,642,983 - +0.2
2,642,983 - +0.1
2,642,984 + -0.4
2,643,079 - +0.5
2,643,098 - +0.6
2,643,106 - -0.3
2,643,106 - +0.3
2,643,108 + -0.0
2,643,108 + +0.2
2,643,109 - +1.6
2,643,236 + +0.3
2,643,236 + -0.1
2,643,353 + CA264_11405 0.17 -0.7
2,643,353 + CA264_11405 0.17 +0.5
2,643,353 + CA264_11405 0.17 -1.6
2,643,353 + CA264_11405 0.17 -0.6
2,643,353 + CA264_11405 0.17 -0.6
2,643,354 - CA264_11405 0.17 +0.1
2,643,354 - CA264_11405 0.17 -0.2
2,643,407 + CA264_11405 0.23 -1.3
2,643,407 + CA264_11405 0.23 +0.6
2,643,408 - CA264_11405 0.23 +0.6
2,643,408 - CA264_11405 0.23 -0.0
2,643,408 - CA264_11405 0.23 +0.2
2,643,408 - CA264_11405 0.23 -0.5
2,643,447 - CA264_11405 0.28 -0.2
2,643,486 - CA264_11405 0.32 -0.9
2,643,551 + CA264_11405 0.39 +0.2
2,643,594 - CA264_11405 0.44 +0.0
2,643,691 + CA264_11405 0.55 -0.1
2,643,692 - CA264_11405 0.55 -0.8
2,643,694 + CA264_11405 0.55 -1.0
2,643,779 + CA264_11405 0.64 -0.2
2,643,811 - CA264_11405 0.68 +0.2
2,643,871 + CA264_11405 0.75 -0.0
2,643,903 + CA264_11405 0.78 -0.8
2,643,903 + CA264_11405 0.78 +0.2
2,643,904 - CA264_11405 0.78 -0.1
2,643,925 - CA264_11405 0.81 -0.8
2,643,989 + CA264_11405 0.88 -0.9
2,643,999 - CA264_11405 0.89 -1.6
2,644,044 + -0.5
2,644,058 - +0.7
2,644,105 + -0.8
2,644,132 + -1.1
2,644,133 - +0.4
2,644,209 + -0.5
2,644,210 - -0.4
2,644,286 + CA264_11410 0.22 -0.7
2,644,287 - CA264_11410 0.22 -0.3
2,644,321 + CA264_11410 0.28 -0.9
2,644,327 - CA264_11410 0.28 -1.2
2,644,378 + CA264_11410 0.37 -0.2
2,644,378 + CA264_11410 0.37 -0.3
2,644,378 + CA264_11410 0.37 -1.0
2,644,381 - CA264_11410 0.38 +0.1
2,644,381 - CA264_11410 0.38 +0.2
2,644,562 + CA264_11410 0.68 -0.5
2,644,563 - CA264_11410 0.68 +0.1
2,644,563 - CA264_11410 0.68 -0.6
2,644,598 + CA264_11410 0.74 -1.4
2,644,598 + CA264_11410 0.74 +1.7
2,644,599 - CA264_11410 0.74 -0.5
2,644,600 + CA264_11410 0.74 -1.7
2,644,600 + CA264_11410 0.74 -0.5
2,644,600 + CA264_11410 0.74 -0.0
2,644,600 + CA264_11410 0.74 -1.7
2,644,601 - CA264_11410 0.74 -0.1
2,644,601 - CA264_11410 0.74 -0.1
2,644,601 - CA264_11410 0.74 +0.1
2,644,601 - CA264_11410 0.74 +0.2
2,644,694 + CA264_11410 0.90 -0.0
2,644,695 - CA264_11410 0.90 -0.9
2,644,695 - CA264_11410 0.90 +0.7
2,644,739 - -0.4
2,644,755 + -1.2
2,644,762 - -0.7
2,644,772 + -1.2
2,644,772 + -2.6
2,644,772 + -1.1
2,644,773 - +0.2
2,644,775 - -0.4
2,644,775 - -0.7
2,644,775 - -0.3
2,644,776 + -0.4
2,644,792 + +1.1
2,644,866 - -0.7
2,644,892 + -0.6
2,644,903 + CA264_11415 0.11 -0.8
2,644,903 + CA264_11415 0.11 -0.3
2,644,903 + CA264_11415 0.11 -1.0
2,644,904 - CA264_11415 0.11 -1.4
2,644,904 - CA264_11415 0.11 +1.3
2,644,905 + CA264_11415 0.11 -1.0
2,644,905 + CA264_11415 0.11 -1.2
2,644,925 + CA264_11415 0.12 +0.7
2,644,926 - CA264_11415 0.12 -0.3
2,645,041 - CA264_11415 0.20 -2.0
2,645,066 + CA264_11415 0.22 -0.3

Or see this region's nucleotide sequence