Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10755

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10750 and CA264_10755 are separated by 191 nucleotidesCA264_10755 and CA264_10760 are separated by 267 nucleotides CA264_10750: CA264_10750 - SAM-dependent methyltransferase, at 2,485,285 to 2,485,905 _10750 CA264_10755: CA264_10755 - polyprenyl synthetase, at 2,486,097 to 2,487,074 _10755 CA264_10760: CA264_10760 - alpha/beta hydrolase, at 2,487,342 to 2,488,187 _10760 Position (kb) 2486 2487 2488Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2485.151 kb on + strandat 2485.152 kb on - strandat 2485.172 kb on + strandat 2485.173 kb on - strandat 2485.216 kb on + strandat 2485.217 kb on - strandat 2485.262 kb on + strandat 2485.287 kb on - strandat 2485.342 kb on + strandat 2485.363 kb on - strand, within CA264_10750at 2485.371 kb on + strand, within CA264_10750at 2485.371 kb on + strand, within CA264_10750at 2485.372 kb on - strand, within CA264_10750at 2485.524 kb on + strand, within CA264_10750at 2485.639 kb on + strand, within CA264_10750at 2485.723 kb on + strand, within CA264_10750at 2485.724 kb on - strand, within CA264_10750at 2485.724 kb on - strand, within CA264_10750at 2485.728 kb on - strand, within CA264_10750at 2485.759 kb on + strand, within CA264_10750at 2485.760 kb on - strand, within CA264_10750at 2485.761 kb on + strand, within CA264_10750at 2485.762 kb on - strand, within CA264_10750at 2485.765 kb on + strand, within CA264_10750at 2485.766 kb on - strand, within CA264_10750at 2485.814 kb on + strand, within CA264_10750at 2485.851 kb on + strandat 2485.851 kb on + strandat 2485.852 kb on - strandat 2485.961 kb on + strandat 2486.093 kb on - strandat 2486.093 kb on - strandat 2486.093 kb on - strandat 2486.098 kb on + strandat 2486.099 kb on - strandat 2486.099 kb on - strandat 2486.099 kb on - strandat 2486.099 kb on - strandat 2486.099 kb on - strandat 2487.051 kb on + strandat 2487.093 kb on + strandat 2487.094 kb on - strandat 2487.141 kb on + strandat 2487.164 kb on + strandat 2487.164 kb on + strandat 2487.165 kb on - strandat 2487.181 kb on + strandat 2487.182 kb on - strandat 2487.215 kb on + strandat 2487.216 kb on - strandat 2487.216 kb on - strandat 2487.261 kb on + strandat 2487.363 kb on + strandat 2487.364 kb on - strandat 2487.402 kb on + strandat 2487.541 kb on - strand, within CA264_10760at 2487.802 kb on - strand, within CA264_10760at 2487.807 kb on - strand, within CA264_10760at 2487.858 kb on + strand, within CA264_10760at 2487.859 kb on - strand, within CA264_10760at 2487.859 kb on - strand, within CA264_10760at 2487.882 kb on - strand, within CA264_10760at 2487.897 kb on + strand, within CA264_10760at 2487.918 kb on + strand, within CA264_10760at 2487.918 kb on + strand, within CA264_10760

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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2,485,151 + -0.3
2,485,152 - +0.3
2,485,172 + +0.5
2,485,173 - -0.3
2,485,216 + -0.3
2,485,217 - +0.2
2,485,262 + -0.5
2,485,287 - +0.1
2,485,342 + -0.4
2,485,363 - CA264_10750 0.13 +0.1
2,485,371 + CA264_10750 0.14 -0.7
2,485,371 + CA264_10750 0.14 +0.0
2,485,372 - CA264_10750 0.14 +0.8
2,485,524 + CA264_10750 0.38 -0.3
2,485,639 + CA264_10750 0.57 -0.3
2,485,723 + CA264_10750 0.71 +2.5
2,485,724 - CA264_10750 0.71 -0.5
2,485,724 - CA264_10750 0.71 +0.1
2,485,728 - CA264_10750 0.71 +3.1
2,485,759 + CA264_10750 0.76 -0.5
2,485,760 - CA264_10750 0.76 -1.0
2,485,761 + CA264_10750 0.77 +0.4
2,485,762 - CA264_10750 0.77 +0.2
2,485,765 + CA264_10750 0.77 -0.0
2,485,766 - CA264_10750 0.77 +1.2
2,485,814 + CA264_10750 0.85 -2.4
2,485,851 + -0.6
2,485,851 + -0.5
2,485,852 - +0.6
2,485,961 + -0.1
2,486,093 - -1.4
2,486,093 - -1.0
2,486,093 - +1.5
2,486,098 + -1.8
2,486,099 - -0.6
2,486,099 - +0.5
2,486,099 - +0.6
2,486,099 - +0.2
2,486,099 - -0.2
2,487,051 + -1.7
2,487,093 + -0.2
2,487,094 - -0.7
2,487,141 + -0.8
2,487,164 + +0.8
2,487,164 + +0.7
2,487,165 - -0.3
2,487,181 + -0.6
2,487,182 - -0.6
2,487,215 + +0.0
2,487,216 - +0.1
2,487,216 - -0.9
2,487,261 + -0.3
2,487,363 + +0.5
2,487,364 - +0.7
2,487,402 + -0.0
2,487,541 - CA264_10760 0.24 +1.2
2,487,802 - CA264_10760 0.54 +0.9
2,487,807 - CA264_10760 0.55 -0.5
2,487,858 + CA264_10760 0.61 +0.2
2,487,859 - CA264_10760 0.61 -0.0
2,487,859 - CA264_10760 0.61 -1.5
2,487,882 - CA264_10760 0.64 +0.6
2,487,897 + CA264_10760 0.66 -0.0
2,487,918 + CA264_10760 0.68 +0.6
2,487,918 + CA264_10760 0.68 -0.2

Or see this region's nucleotide sequence