Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10320

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10315 and CA264_10320 are separated by 97 nucleotidesCA264_10320 and CA264_10325 are separated by 194 nucleotidesCA264_10325 and CA264_10330 overlap by 13 nucleotides CA264_10315: CA264_10315 - DNA-binding protein, at 2,398,025 to 2,398,633 _10315 CA264_10320: CA264_10320 - hypothetical protein, at 2,398,731 to 2,399,615 _10320 CA264_10325: CA264_10325 - plasmid mobilization relaxosome protein MobC, at 2,399,810 to 2,400,199 _10325 CA264_10330: CA264_10330 - hypothetical protein, at 2,400,187 to 2,401,440 _10330 Position (kb) 2398 2399 2400Strain fitness (log2 ratio) -2 -1 0 1 2at 2397.886 kb on + strandat 2397.890 kb on + strandat 2397.891 kb on - strandat 2397.895 kb on + strandat 2397.895 kb on + strandat 2397.895 kb on + strandat 2397.895 kb on + strandat 2397.896 kb on - strandat 2397.898 kb on + strandat 2397.908 kb on + strandat 2397.910 kb on + strandat 2397.910 kb on + strandat 2397.963 kb on - strandat 2398.004 kb on + strandat 2398.004 kb on + strandat 2398.004 kb on + strandat 2398.005 kb on - strandat 2398.203 kb on - strand, within CA264_10315at 2398.268 kb on - strand, within CA264_10315at 2398.384 kb on + strand, within CA264_10315at 2398.385 kb on - strand, within CA264_10315at 2398.416 kb on - strand, within CA264_10315at 2398.416 kb on - strand, within CA264_10315at 2398.521 kb on - strand, within CA264_10315at 2398.553 kb on - strand, within CA264_10315at 2398.725 kb on + strandat 2398.731 kb on - strandat 2398.731 kb on - strandat 2398.849 kb on - strand, within CA264_10320at 2398.862 kb on - strand, within CA264_10320at 2398.914 kb on + strand, within CA264_10320at 2398.915 kb on - strand, within CA264_10320at 2399.060 kb on - strand, within CA264_10320at 2399.139 kb on - strand, within CA264_10320at 2399.171 kb on - strand, within CA264_10320at 2399.181 kb on + strand, within CA264_10320at 2399.238 kb on + strand, within CA264_10320at 2399.239 kb on - strand, within CA264_10320at 2399.455 kb on + strand, within CA264_10320at 2399.455 kb on + strand, within CA264_10320at 2399.455 kb on + strand, within CA264_10320at 2399.455 kb on + strand, within CA264_10320at 2399.455 kb on + strand, within CA264_10320at 2399.456 kb on - strand, within CA264_10320at 2399.456 kb on - strand, within CA264_10320at 2399.456 kb on - strand, within CA264_10320at 2399.457 kb on + strand, within CA264_10320at 2399.458 kb on - strand, within CA264_10320at 2399.464 kb on - strand, within CA264_10320at 2399.617 kb on + strandat 2399.617 kb on + strandat 2399.617 kb on + strandat 2399.646 kb on - strandat 2399.651 kb on + strandat 2399.659 kb on - strandat 2399.773 kb on - strandat 2399.796 kb on + strandat 2399.796 kb on + strandat 2399.797 kb on - strandat 2399.797 kb on - strandat 2399.800 kb on + strandat 2399.800 kb on + strandat 2399.801 kb on - strandat 2399.801 kb on - strandat 2399.801 kb on - strandat 2399.801 kb on - strandat 2399.803 kb on + strandat 2399.804 kb on - strandat 2399.804 kb on - strandat 2399.825 kb on - strandat 2400.105 kb on + strand, within CA264_10325at 2400.201 kb on + strandat 2400.232 kb on + strandat 2400.236 kb on - strandat 2400.289 kb on + strandat 2400.455 kb on - strand, within CA264_10330at 2400.488 kb on - strand, within CA264_10330at 2400.579 kb on + strand, within CA264_10330at 2400.580 kb on - strand, within CA264_10330

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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2,397,886 + -0.4
2,397,890 + -0.2
2,397,891 - +0.5
2,397,895 + -0.8
2,397,895 + -2.0
2,397,895 + -2.0
2,397,895 + -0.3
2,397,896 - +1.0
2,397,898 + -0.8
2,397,908 + +0.6
2,397,910 + -0.0
2,397,910 + -0.3
2,397,963 - +0.3
2,398,004 + -0.9
2,398,004 + -0.2
2,398,004 + +0.5
2,398,005 - -0.6
2,398,203 - CA264_10315 0.29 +0.1
2,398,268 - CA264_10315 0.40 +0.5
2,398,384 + CA264_10315 0.59 +0.5
2,398,385 - CA264_10315 0.59 +0.3
2,398,416 - CA264_10315 0.64 +0.2
2,398,416 - CA264_10315 0.64 +0.5
2,398,521 - CA264_10315 0.81 +0.7
2,398,553 - CA264_10315 0.87 -0.0
2,398,725 + +0.1
2,398,731 - -0.2
2,398,731 - +0.3
2,398,849 - CA264_10320 0.13 +0.1
2,398,862 - CA264_10320 0.15 +0.5
2,398,914 + CA264_10320 0.21 -0.2
2,398,915 - CA264_10320 0.21 +0.1
2,399,060 - CA264_10320 0.37 +1.1
2,399,139 - CA264_10320 0.46 +0.2
2,399,171 - CA264_10320 0.50 -1.0
2,399,181 + CA264_10320 0.51 +0.3
2,399,238 + CA264_10320 0.57 -0.1
2,399,239 - CA264_10320 0.57 -1.2
2,399,455 + CA264_10320 0.82 +0.3
2,399,455 + CA264_10320 0.82 -0.8
2,399,455 + CA264_10320 0.82 +0.3
2,399,455 + CA264_10320 0.82 -0.0
2,399,455 + CA264_10320 0.82 +0.2
2,399,456 - CA264_10320 0.82 -0.4
2,399,456 - CA264_10320 0.82 -0.0
2,399,456 - CA264_10320 0.82 -0.3
2,399,457 + CA264_10320 0.82 +1.5
2,399,458 - CA264_10320 0.82 +0.2
2,399,464 - CA264_10320 0.83 +0.4
2,399,617 + -0.4
2,399,617 + +0.6
2,399,617 + +0.2
2,399,646 - +0.4
2,399,651 + +0.5
2,399,659 - -1.5
2,399,773 - -0.2
2,399,796 + +0.1
2,399,796 + -1.2
2,399,797 - -0.4
2,399,797 - -0.3
2,399,800 + +0.2
2,399,800 + +0.4
2,399,801 - -0.7
2,399,801 - +0.5
2,399,801 - -0.8
2,399,801 - -0.4
2,399,803 + +2.2
2,399,804 - +1.2
2,399,804 - -0.2
2,399,825 - +0.1
2,400,105 + CA264_10325 0.76 +0.1
2,400,201 + +0.3
2,400,232 + -0.2
2,400,236 - -0.6
2,400,289 + +0.2
2,400,455 - CA264_10330 0.21 -0.8
2,400,488 - CA264_10330 0.24 +0.0
2,400,579 + CA264_10330 0.31 +0.6
2,400,580 - CA264_10330 0.31 -0.1

Or see this region's nucleotide sequence