Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09970 and CA264_09975 are separated by 12 nucleotides CA264_09975 and CA264_09980 are separated by 19 nucleotides CA264_09980 and CA264_09985 are separated by 46 nucleotides
CA264_09970: CA264_09970 - conjugal transfer protein TraG, at 2,320,400 to 2,322,910
_09970
CA264_09975: CA264_09975 - hypothetical protein, at 2,322,923 to 2,323,270
_09975
CA264_09980: CA264_09980 - carbamoyl phosphate synthetase, at 2,323,290 to 2,323,598
_09980
CA264_09985: CA264_09985 - hypothetical protein, at 2,323,645 to 2,324,124
_09985
Position (kb)
2322
2323
2324 Strain fitness (log2 ratio)
-2
-1
0
1 at 2321.936 kb on + strand, within CA264_09970 at 2321.944 kb on + strand, within CA264_09970 at 2322.207 kb on + strand, within CA264_09970 at 2322.550 kb on + strand, within CA264_09970 at 2322.551 kb on - strand, within CA264_09970 at 2322.551 kb on - strand, within CA264_09970 at 2322.589 kb on + strand, within CA264_09970 at 2322.591 kb on + strand, within CA264_09970 at 2322.591 kb on + strand, within CA264_09970 at 2322.592 kb on - strand, within CA264_09970 at 2322.684 kb on + strand at 2322.896 kb on + strand at 2322.925 kb on - strand at 2322.927 kb on + strand at 2322.927 kb on + strand at 2322.928 kb on - strand at 2323.052 kb on - strand, within CA264_09975 at 2323.195 kb on + strand, within CA264_09975 at 2323.196 kb on - strand, within CA264_09975 at 2323.198 kb on - strand, within CA264_09975 at 2323.252 kb on + strand at 2323.252 kb on + strand at 2323.253 kb on - strand at 2323.311 kb on - strand at 2323.332 kb on + strand, within CA264_09980 at 2323.333 kb on - strand, within CA264_09980 at 2323.451 kb on - strand, within CA264_09980 at 2323.503 kb on + strand, within CA264_09980 at 2323.503 kb on + strand, within CA264_09980 at 2323.653 kb on + strand at 2323.747 kb on + strand, within CA264_09985 at 2323.781 kb on + strand, within CA264_09985 at 2324.057 kb on - strand, within CA264_09985 at 2324.198 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 2,321,936 + CA264_09970 0.61 +0.2 2,321,944 + CA264_09970 0.61 +0.2 2,322,207 + CA264_09970 0.72 +0.3 2,322,550 + CA264_09970 0.86 +0.4 2,322,551 - CA264_09970 0.86 +0.2 2,322,551 - CA264_09970 0.86 +0.7 2,322,589 + CA264_09970 0.87 +0.0 2,322,591 + CA264_09970 0.87 -0.6 2,322,591 + CA264_09970 0.87 -0.0 2,322,592 - CA264_09970 0.87 +1.0 2,322,684 + +0.9 2,322,896 + -0.7 2,322,925 - -1.8 2,322,927 + -0.5 2,322,927 + -0.2 2,322,928 - -0.0 2,323,052 - CA264_09975 0.37 +0.5 2,323,195 + CA264_09975 0.78 +0.5 2,323,196 - CA264_09975 0.78 +0.5 2,323,198 - CA264_09975 0.79 +0.2 2,323,252 + -1.2 2,323,252 + -0.2 2,323,253 - -1.3 2,323,311 - +0.2 2,323,332 + CA264_09980 0.14 +0.0 2,323,333 - CA264_09980 0.14 -0.5 2,323,451 - CA264_09980 0.52 +1.7 2,323,503 + CA264_09980 0.69 -0.7 2,323,503 + CA264_09980 0.69 -0.2 2,323,653 + -0.1 2,323,747 + CA264_09985 0.21 -0.5 2,323,781 + CA264_09985 0.28 +0.1 2,324,057 - CA264_09985 0.86 +0.3 2,324,198 + +1.2
Or see this region's nucleotide sequence