Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09955 and CA264_09960 overlap by 4 nucleotides CA264_09960 and CA264_09965 are separated by 51 nucleotides CA264_09965 and CA264_09970 overlap by 19 nucleotides
CA264_09955: CA264_09955 - hypothetical protein, at 2,318,410 to 2,319,039
_09955
CA264_09960: CA264_09960 - hypothetical protein, at 2,319,036 to 2,319,689
_09960
CA264_09965: CA264_09965 - conjugal transfer protein TraI, at 2,319,741 to 2,320,418
_09965
CA264_09970: CA264_09970 - conjugal transfer protein TraG, at 2,320,400 to 2,322,910
_09970
Position (kb)
2319
2320
2321 Strain fitness (log2 ratio)
-1
0
1 at 2318.800 kb on + strand, within CA264_09955 at 2318.800 kb on + strand, within CA264_09955 at 2318.801 kb on - strand, within CA264_09955 at 2319.457 kb on + strand, within CA264_09960 at 2319.457 kb on + strand, within CA264_09960 at 2319.458 kb on - strand, within CA264_09960 at 2319.544 kb on + strand, within CA264_09960 at 2319.545 kb on - strand, within CA264_09960 at 2319.545 kb on - strand, within CA264_09960 at 2319.587 kb on - strand, within CA264_09960 at 2319.673 kb on - strand at 2319.673 kb on - strand at 2319.673 kb on - strand at 2319.689 kb on + strand at 2319.689 kb on + strand at 2319.713 kb on + strand at 2319.714 kb on - strand at 2319.942 kb on + strand, within CA264_09965 at 2319.942 kb on + strand, within CA264_09965 at 2319.997 kb on + strand, within CA264_09965 at 2319.998 kb on - strand, within CA264_09965 at 2320.298 kb on + strand, within CA264_09965 at 2320.392 kb on + strand at 2320.393 kb on - strand at 2320.393 kb on - strand at 2320.393 kb on - strand at 2320.402 kb on - strand at 2320.516 kb on - strand at 2320.523 kb on + strand at 2320.523 kb on + strand at 2320.523 kb on + strand at 2320.762 kb on + strand, within CA264_09970 at 2320.762 kb on + strand, within CA264_09970 at 2320.782 kb on - strand, within CA264_09970 at 2320.814 kb on - strand, within CA264_09970 at 2320.814 kb on - strand, within CA264_09970 at 2320.820 kb on + strand, within CA264_09970 at 2320.852 kb on - strand, within CA264_09970 at 2320.878 kb on + strand, within CA264_09970 at 2320.887 kb on + strand, within CA264_09970 at 2320.887 kb on + strand, within CA264_09970 at 2320.888 kb on - strand, within CA264_09970 at 2321.127 kb on + strand, within CA264_09970 at 2321.143 kb on - strand, within CA264_09970 at 2321.183 kb on - strand, within CA264_09970 at 2321.227 kb on - strand, within CA264_09970 at 2321.280 kb on + strand, within CA264_09970 at 2321.280 kb on + strand, within CA264_09970 at 2321.281 kb on - strand, within CA264_09970
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 2,318,800 + CA264_09955 0.62 -0.0 2,318,800 + CA264_09955 0.62 +0.5 2,318,801 - CA264_09955 0.62 +0.4 2,319,457 + CA264_09960 0.64 +0.3 2,319,457 + CA264_09960 0.64 -0.4 2,319,458 - CA264_09960 0.65 -0.8 2,319,544 + CA264_09960 0.78 -0.0 2,319,545 - CA264_09960 0.78 -0.5 2,319,545 - CA264_09960 0.78 -0.7 2,319,587 - CA264_09960 0.84 -0.5 2,319,673 - +0.1 2,319,673 - +0.3 2,319,673 - +0.6 2,319,689 + -0.8 2,319,689 + +0.4 2,319,713 + -0.5 2,319,714 - +0.3 2,319,942 + CA264_09965 0.30 +0.0 2,319,942 + CA264_09965 0.30 -0.1 2,319,997 + CA264_09965 0.38 +1.1 2,319,998 - CA264_09965 0.38 -0.0 2,320,298 + CA264_09965 0.82 +0.3 2,320,392 + -0.3 2,320,393 - +0.0 2,320,393 - -0.0 2,320,393 - -0.7 2,320,402 - -1.2 2,320,516 - -0.0 2,320,523 + +0.5 2,320,523 + -0.2 2,320,523 + -0.4 2,320,762 + CA264_09970 0.14 -1.2 2,320,762 + CA264_09970 0.14 -0.2 2,320,782 - CA264_09970 0.15 +0.2 2,320,814 - CA264_09970 0.16 -0.1 2,320,814 - CA264_09970 0.16 +1.7 2,320,820 + CA264_09970 0.17 +0.4 2,320,852 - CA264_09970 0.18 -0.3 2,320,878 + CA264_09970 0.19 -1.0 2,320,887 + CA264_09970 0.19 -0.6 2,320,887 + CA264_09970 0.19 -0.7 2,320,888 - CA264_09970 0.19 -0.3 2,321,127 + CA264_09970 0.29 -0.6 2,321,143 - CA264_09970 0.30 -0.1 2,321,183 - CA264_09970 0.31 -0.2 2,321,227 - CA264_09970 0.33 +1.2 2,321,280 + CA264_09970 0.35 +0.4 2,321,280 + CA264_09970 0.35 +0.2 2,321,281 - CA264_09970 0.35 -0.3
Or see this region's nucleotide sequence