Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09925 and CA264_09930 are separated by 53 nucleotides CA264_09930 and CA264_09935 are separated by 37 nucleotides CA264_09935 and CA264_09940 are separated by 54 nucleotides
CA264_09925: CA264_09925 - hypothetical protein, at 2,313,157 to 2,313,462
_09925
CA264_09930: CA264_09930 - hypothetical protein, at 2,313,516 to 2,314,304
_09930
CA264_09935: CA264_09935 - conjugative transposon protein TraN, at 2,314,342 to 2,315,187
_09935
CA264_09940: CA264_09940 - conjugative transposon protein TraM, at 2,315,242 to 2,316,486
_09940
Position (kb)
2313
2314
2315 Strain fitness (log2 ratio)
-2
-1
0
1 at 2312.518 kb on - strand at 2312.551 kb on + strand at 2312.625 kb on - strand at 2312.702 kb on + strand at 2312.752 kb on + strand at 2312.753 kb on - strand at 2312.860 kb on - strand at 2312.880 kb on + strand at 2312.880 kb on + strand at 2312.911 kb on - strand at 2312.911 kb on - strand at 2312.953 kb on + strand at 2312.958 kb on - strand at 2313.077 kb on - strand at 2313.077 kb on - strand at 2313.083 kb on + strand at 2313.084 kb on - strand at 2313.084 kb on - strand at 2313.216 kb on - strand, within CA264_09925 at 2313.227 kb on + strand, within CA264_09925 at 2313.228 kb on - strand, within CA264_09925 at 2313.228 kb on - strand, within CA264_09925 at 2313.272 kb on + strand, within CA264_09925 at 2313.272 kb on + strand, within CA264_09925 at 2313.272 kb on + strand, within CA264_09925 at 2313.419 kb on - strand, within CA264_09925 at 2313.419 kb on - strand, within CA264_09925 at 2313.419 kb on - strand, within CA264_09925 at 2313.481 kb on - strand at 2313.692 kb on + strand, within CA264_09930 at 2313.692 kb on + strand, within CA264_09930 at 2313.692 kb on + strand, within CA264_09930 at 2313.694 kb on + strand, within CA264_09930 at 2313.694 kb on + strand, within CA264_09930 at 2313.741 kb on + strand, within CA264_09930 at 2313.741 kb on + strand, within CA264_09930 at 2313.865 kb on + strand, within CA264_09930 at 2313.865 kb on + strand, within CA264_09930 at 2313.866 kb on - strand, within CA264_09930 at 2313.893 kb on - strand, within CA264_09930 at 2313.943 kb on + strand, within CA264_09930 at 2313.944 kb on - strand, within CA264_09930 at 2314.004 kb on - strand, within CA264_09930 at 2314.022 kb on + strand, within CA264_09930 at 2314.023 kb on - strand, within CA264_09930 at 2314.023 kb on - strand, within CA264_09930 at 2314.023 kb on - strand, within CA264_09930 at 2314.042 kb on + strand, within CA264_09930 at 2314.166 kb on + strand, within CA264_09930 at 2314.172 kb on - strand, within CA264_09930 at 2314.172 kb on - strand, within CA264_09930 at 2314.172 kb on - strand, within CA264_09930 at 2314.261 kb on + strand at 2314.261 kb on + strand at 2314.283 kb on - strand at 2314.330 kb on + strand at 2314.331 kb on - strand at 2314.331 kb on - strand at 2314.348 kb on + strand at 2314.349 kb on - strand at 2314.396 kb on - strand at 2314.471 kb on - strand, within CA264_09935 at 2314.501 kb on - strand, within CA264_09935 at 2314.532 kb on + strand, within CA264_09935 at 2314.532 kb on + strand, within CA264_09935 at 2314.595 kb on + strand, within CA264_09935 at 2314.595 kb on + strand, within CA264_09935 at 2314.595 kb on + strand, within CA264_09935 at 2314.596 kb on - strand, within CA264_09935 at 2314.617 kb on + strand, within CA264_09935 at 2315.017 kb on + strand, within CA264_09935 at 2315.145 kb on + strand at 2315.212 kb on + strand at 2315.213 kb on - strand at 2315.213 kb on - strand at 2315.214 kb on + strand at 2315.215 kb on - strand at 2315.215 kb on - strand at 2315.244 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 2,312,518 - -0.2 2,312,551 + +0.0 2,312,625 - +0.3 2,312,702 + +1.5 2,312,752 + -0.4 2,312,753 - -0.3 2,312,860 - -0.0 2,312,880 + +0.4 2,312,880 + -1.3 2,312,911 - -0.3 2,312,911 - +0.3 2,312,953 + -0.5 2,312,958 - +0.8 2,313,077 - -0.2 2,313,077 - +0.6 2,313,083 + -2.0 2,313,084 - -0.3 2,313,084 - -1.1 2,313,216 - CA264_09925 0.19 +1.3 2,313,227 + CA264_09925 0.23 -0.2 2,313,228 - CA264_09925 0.23 -0.5 2,313,228 - CA264_09925 0.23 +0.7 2,313,272 + CA264_09925 0.38 +1.0 2,313,272 + CA264_09925 0.38 +0.5 2,313,272 + CA264_09925 0.38 +0.5 2,313,419 - CA264_09925 0.86 +0.1 2,313,419 - CA264_09925 0.86 -0.0 2,313,419 - CA264_09925 0.86 +0.1 2,313,481 - -0.0 2,313,692 + CA264_09930 0.22 -0.3 2,313,692 + CA264_09930 0.22 -1.3 2,313,692 + CA264_09930 0.22 -0.0 2,313,694 + CA264_09930 0.23 +1.2 2,313,694 + CA264_09930 0.23 +0.2 2,313,741 + CA264_09930 0.29 +0.2 2,313,741 + CA264_09930 0.29 +0.1 2,313,865 + CA264_09930 0.44 +0.3 2,313,865 + CA264_09930 0.44 +1.1 2,313,866 - CA264_09930 0.44 -0.2 2,313,893 - CA264_09930 0.48 -0.1 2,313,943 + CA264_09930 0.54 +1.2 2,313,944 - CA264_09930 0.54 +0.7 2,314,004 - CA264_09930 0.62 +0.3 2,314,022 + CA264_09930 0.64 +0.1 2,314,023 - CA264_09930 0.64 +0.5 2,314,023 - CA264_09930 0.64 +0.5 2,314,023 - CA264_09930 0.64 +0.3 2,314,042 + CA264_09930 0.67 -1.2 2,314,166 + CA264_09930 0.82 +0.8 2,314,172 - CA264_09930 0.83 -0.2 2,314,172 - CA264_09930 0.83 +0.4 2,314,172 - CA264_09930 0.83 -1.2 2,314,261 + +1.0 2,314,261 + -0.5 2,314,283 - -0.2 2,314,330 + +0.3 2,314,331 - +0.4 2,314,331 - +0.3 2,314,348 + -0.1 2,314,349 - -0.5 2,314,396 - -0.3 2,314,471 - CA264_09935 0.15 +1.0 2,314,501 - CA264_09935 0.19 -0.4 2,314,532 + CA264_09935 0.22 +1.0 2,314,532 + CA264_09935 0.22 +0.3 2,314,595 + CA264_09935 0.30 -0.3 2,314,595 + CA264_09935 0.30 +0.5 2,314,595 + CA264_09935 0.30 +1.4 2,314,596 - CA264_09935 0.30 -0.3 2,314,617 + CA264_09935 0.33 +1.7 2,315,017 + CA264_09935 0.80 -0.0 2,315,145 + -0.7 2,315,212 + +0.0 2,315,213 - +0.3 2,315,213 - -0.1 2,315,214 + +0.7 2,315,215 - +0.7 2,315,215 - -0.8 2,315,244 - -0.5
Or see this region's nucleotide sequence