Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09145

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09140 and CA264_09145 are separated by 442 nucleotidesCA264_09145 and CA264_09150 are separated by 126 nucleotidesCA264_09150 and CA264_09155 are separated by 188 nucleotides CA264_09140: CA264_09140 - chloramphenicol acetyltransferase, at 2,142,894 to 2,143,544 _09140 CA264_09145: CA264_09145 - ammonia channel protein, at 2,143,987 to 2,145,348 _09145 CA264_09150: CA264_09150 - Crp/Fnr family transcriptional regulator, at 2,145,475 to 2,146,122 _09150 CA264_09155: CA264_09155 - anion permease, at 2,146,311 to 2,147,111 _09155 Position (kb) 2143 2144 2145 2146Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2143.006 kb on + strand, within CA264_09140at 2143.006 kb on + strand, within CA264_09140at 2143.023 kb on + strand, within CA264_09140at 2143.024 kb on - strand, within CA264_09140at 2143.143 kb on + strand, within CA264_09140at 2143.191 kb on - strand, within CA264_09140at 2143.290 kb on + strand, within CA264_09140at 2143.291 kb on - strand, within CA264_09140at 2143.291 kb on - strand, within CA264_09140at 2143.297 kb on - strand, within CA264_09140at 2143.297 kb on - strand, within CA264_09140at 2143.315 kb on + strand, within CA264_09140at 2143.367 kb on + strand, within CA264_09140at 2143.441 kb on + strand, within CA264_09140at 2143.460 kb on - strand, within CA264_09140at 2143.509 kb on + strandat 2143.522 kb on + strandat 2143.543 kb on - strandat 2143.551 kb on - strandat 2143.551 kb on - strandat 2143.556 kb on + strandat 2143.732 kb on + strandat 2143.791 kb on - strandat 2144.072 kb on + strandat 2144.090 kb on + strandat 2144.091 kb on - strandat 2144.167 kb on + strand, within CA264_09145at 2144.167 kb on + strand, within CA264_09145at 2144.196 kb on - strand, within CA264_09145at 2144.196 kb on - strand, within CA264_09145at 2144.221 kb on - strand, within CA264_09145at 2144.323 kb on - strand, within CA264_09145at 2144.430 kb on + strand, within CA264_09145at 2144.464 kb on - strand, within CA264_09145at 2144.470 kb on + strand, within CA264_09145at 2144.471 kb on - strand, within CA264_09145at 2144.471 kb on - strand, within CA264_09145at 2144.472 kb on + strand, within CA264_09145at 2144.506 kb on + strand, within CA264_09145at 2144.558 kb on + strand, within CA264_09145at 2144.558 kb on + strand, within CA264_09145at 2144.559 kb on - strand, within CA264_09145at 2144.595 kb on + strand, within CA264_09145at 2144.595 kb on + strand, within CA264_09145at 2144.595 kb on + strand, within CA264_09145at 2144.596 kb on - strand, within CA264_09145at 2144.596 kb on - strand, within CA264_09145at 2144.596 kb on - strand, within CA264_09145at 2144.596 kb on - strand, within CA264_09145at 2144.596 kb on - strand, within CA264_09145at 2144.596 kb on - strand, within CA264_09145at 2144.596 kb on - strand, within CA264_09145at 2144.596 kb on - strand, within CA264_09145at 2144.654 kb on + strand, within CA264_09145at 2144.655 kb on - strand, within CA264_09145at 2144.680 kb on + strand, within CA264_09145at 2144.684 kb on + strand, within CA264_09145at 2144.685 kb on - strand, within CA264_09145at 2144.685 kb on - strand, within CA264_09145at 2144.751 kb on + strand, within CA264_09145at 2144.751 kb on + strand, within CA264_09145at 2144.863 kb on - strand, within CA264_09145at 2144.868 kb on + strand, within CA264_09145at 2144.869 kb on - strand, within CA264_09145at 2144.979 kb on - strand, within CA264_09145at 2144.979 kb on - strand, within CA264_09145at 2144.979 kb on - strand, within CA264_09145at 2145.071 kb on + strand, within CA264_09145at 2145.071 kb on + strand, within CA264_09145at 2145.134 kb on - strand, within CA264_09145at 2145.134 kb on - strand, within CA264_09145at 2145.341 kb on - strandat 2145.341 kb on - strandat 2145.442 kb on - strandat 2145.689 kb on - strand, within CA264_09150at 2145.691 kb on + strand, within CA264_09150at 2145.691 kb on + strand, within CA264_09150at 2145.691 kb on + strand, within CA264_09150at 2145.691 kb on + strand, within CA264_09150at 2145.692 kb on - strand, within CA264_09150at 2145.833 kb on - strand, within CA264_09150at 2145.835 kb on - strand, within CA264_09150at 2145.916 kb on - strand, within CA264_09150at 2146.100 kb on + strandat 2146.100 kb on + strandat 2146.100 kb on + strandat 2146.101 kb on - strandat 2146.120 kb on + strandat 2146.120 kb on + strandat 2146.120 kb on + strandat 2146.120 kb on + strandat 2146.121 kb on - strandat 2146.121 kb on - strandat 2146.172 kb on + strandat 2146.172 kb on + strandat 2146.173 kb on - strandat 2146.173 kb on - strandat 2146.176 kb on + strandat 2146.182 kb on + strandat 2146.183 kb on - strandat 2146.203 kb on - strandat 2146.203 kb on - strandat 2146.253 kb on - strandat 2146.260 kb on - strandat 2146.274 kb on - strandat 2146.280 kb on - strandat 2146.284 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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2,143,006 + CA264_09140 0.17 -0.1
2,143,006 + CA264_09140 0.17 -0.9
2,143,023 + CA264_09140 0.20 +0.6
2,143,024 - CA264_09140 0.20 +0.4
2,143,143 + CA264_09140 0.38 -0.1
2,143,191 - CA264_09140 0.46 +0.6
2,143,290 + CA264_09140 0.61 -0.1
2,143,291 - CA264_09140 0.61 +0.0
2,143,291 - CA264_09140 0.61 -0.3
2,143,297 - CA264_09140 0.62 -0.7
2,143,297 - CA264_09140 0.62 +2.3
2,143,315 + CA264_09140 0.65 +0.3
2,143,367 + CA264_09140 0.73 +0.3
2,143,441 + CA264_09140 0.84 +0.0
2,143,460 - CA264_09140 0.87 -0.2
2,143,509 + +0.0
2,143,522 + +0.4
2,143,543 - +0.1
2,143,551 - -1.1
2,143,551 - -1.2
2,143,556 + -0.5
2,143,732 + +1.1
2,143,791 - +0.1
2,144,072 + +0.3
2,144,090 + +1.8
2,144,091 - +0.6
2,144,167 + CA264_09145 0.13 -1.0
2,144,167 + CA264_09145 0.13 +0.4
2,144,196 - CA264_09145 0.15 +0.1
2,144,196 - CA264_09145 0.15 +0.0
2,144,221 - CA264_09145 0.17 -0.8
2,144,323 - CA264_09145 0.25 +2.5
2,144,430 + CA264_09145 0.33 -0.8
2,144,464 - CA264_09145 0.35 +0.3
2,144,470 + CA264_09145 0.35 +0.2
2,144,471 - CA264_09145 0.36 +0.1
2,144,471 - CA264_09145 0.36 -0.0
2,144,472 + CA264_09145 0.36 +0.5
2,144,506 + CA264_09145 0.38 -0.3
2,144,558 + CA264_09145 0.42 +0.4
2,144,558 + CA264_09145 0.42 +0.6
2,144,559 - CA264_09145 0.42 -0.0
2,144,595 + CA264_09145 0.45 +2.1
2,144,595 + CA264_09145 0.45 +0.5
2,144,595 + CA264_09145 0.45 +0.5
2,144,596 - CA264_09145 0.45 -0.4
2,144,596 - CA264_09145 0.45 -0.9
2,144,596 - CA264_09145 0.45 +0.3
2,144,596 - CA264_09145 0.45 +0.3
2,144,596 - CA264_09145 0.45 -0.2
2,144,596 - CA264_09145 0.45 -2.4
2,144,596 - CA264_09145 0.45 -1.8
2,144,596 - CA264_09145 0.45 +0.6
2,144,654 + CA264_09145 0.49 +1.7
2,144,655 - CA264_09145 0.49 +0.5
2,144,680 + CA264_09145 0.51 +0.7
2,144,684 + CA264_09145 0.51 +1.2
2,144,685 - CA264_09145 0.51 -1.7
2,144,685 - CA264_09145 0.51 -0.6
2,144,751 + CA264_09145 0.56 +0.5
2,144,751 + CA264_09145 0.56 +1.1
2,144,863 - CA264_09145 0.64 +0.5
2,144,868 + CA264_09145 0.65 +0.7
2,144,869 - CA264_09145 0.65 -1.6
2,144,979 - CA264_09145 0.73 +0.6
2,144,979 - CA264_09145 0.73 +1.1
2,144,979 - CA264_09145 0.73 -0.6
2,145,071 + CA264_09145 0.80 +0.2
2,145,071 + CA264_09145 0.80 +1.0
2,145,134 - CA264_09145 0.84 -0.3
2,145,134 - CA264_09145 0.84 +0.0
2,145,341 - +0.4
2,145,341 - +0.1
2,145,442 - +0.7
2,145,689 - CA264_09150 0.33 +0.7
2,145,691 + CA264_09150 0.33 +0.7
2,145,691 + CA264_09150 0.33 +1.1
2,145,691 + CA264_09150 0.33 +0.6
2,145,691 + CA264_09150 0.33 -0.5
2,145,692 - CA264_09150 0.33 +1.4
2,145,833 - CA264_09150 0.55 -0.1
2,145,835 - CA264_09150 0.56 +1.6
2,145,916 - CA264_09150 0.68 +0.3
2,146,100 + -0.5
2,146,100 + +1.3
2,146,100 + +1.8
2,146,101 - -0.7
2,146,120 + +0.6
2,146,120 + +1.1
2,146,120 + +0.5
2,146,120 + +2.6
2,146,121 - -0.6
2,146,121 - +0.5
2,146,172 + -0.6
2,146,172 + +1.6
2,146,173 - +0.1
2,146,173 - +1.3
2,146,176 + +1.4
2,146,182 + +0.7
2,146,183 - +0.1
2,146,203 - +3.3
2,146,203 - +0.9
2,146,253 - +0.6
2,146,260 - +1.7
2,146,274 - +2.5
2,146,280 - +0.0
2,146,284 + +0.9

Or see this region's nucleotide sequence