Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07635

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07630 and CA264_07635 are separated by 88 nucleotidesCA264_07635 and CA264_07640 are separated by 6 nucleotidesCA264_07640 and CA264_07645 are separated by 273 nucleotides CA264_07630: CA264_07630 - DNA topoisomerase I, at 1,770,149 to 1,772,596 _07630 CA264_07635: CA264_07635 - SOS mutagenesis and repair protein UmuC, at 1,772,685 to 1,773,998 _07635 CA264_07640: CA264_07640 - hypothetical protein, at 1,774,005 to 1,774,436 _07640 CA264_07645: CA264_07645 - hypothetical protein, at 1,774,710 to 1,775,162 _07645 Position (kb) 1772 1773 1774Strain fitness (log2 ratio) -2 -1 0 1 2at 1772.427 kb on + strandat 1772.608 kb on + strandat 1772.608 kb on + strandat 1772.609 kb on - strandat 1772.618 kb on + strandat 1772.628 kb on - strandat 1772.637 kb on + strandat 1772.654 kb on + strandat 1772.656 kb on + strandat 1772.656 kb on + strandat 1772.657 kb on - strandat 1772.657 kb on - strandat 1772.687 kb on - strandat 1772.723 kb on + strandat 1772.723 kb on + strandat 1772.725 kb on + strandat 1772.923 kb on - strand, within CA264_07635at 1772.950 kb on - strand, within CA264_07635at 1772.971 kb on + strand, within CA264_07635at 1772.972 kb on - strand, within CA264_07635at 1772.972 kb on - strand, within CA264_07635at 1773.060 kb on + strand, within CA264_07635at 1773.060 kb on + strand, within CA264_07635at 1773.061 kb on - strand, within CA264_07635at 1773.061 kb on - strand, within CA264_07635at 1773.077 kb on - strand, within CA264_07635at 1773.077 kb on - strand, within CA264_07635at 1773.079 kb on + strand, within CA264_07635at 1773.080 kb on - strand, within CA264_07635at 1773.080 kb on - strand, within CA264_07635at 1773.200 kb on + strand, within CA264_07635at 1773.201 kb on - strand, within CA264_07635at 1773.246 kb on - strand, within CA264_07635at 1773.592 kb on - strand, within CA264_07635at 1773.593 kb on + strand, within CA264_07635at 1773.593 kb on + strand, within CA264_07635at 1773.695 kb on - strand, within CA264_07635at 1773.695 kb on - strand, within CA264_07635at 1773.750 kb on - strand, within CA264_07635at 1773.767 kb on - strand, within CA264_07635at 1773.824 kb on - strand, within CA264_07635at 1773.847 kb on - strand, within CA264_07635at 1773.955 kb on + strandat 1773.955 kb on + strandat 1773.955 kb on + strandat 1773.955 kb on + strandat 1774.008 kb on + strandat 1774.032 kb on + strandat 1774.080 kb on - strand, within CA264_07640at 1774.080 kb on - strand, within CA264_07640at 1774.080 kb on - strand, within CA264_07640at 1774.136 kb on + strand, within CA264_07640at 1774.157 kb on + strand, within CA264_07640at 1774.157 kb on + strand, within CA264_07640at 1774.203 kb on + strand, within CA264_07640at 1774.229 kb on + strand, within CA264_07640at 1774.244 kb on + strand, within CA264_07640at 1774.244 kb on + strand, within CA264_07640at 1774.297 kb on + strand, within CA264_07640at 1774.297 kb on + strand, within CA264_07640at 1774.298 kb on - strand, within CA264_07640at 1774.298 kb on - strand, within CA264_07640at 1774.298 kb on - strand, within CA264_07640at 1774.298 kb on - strand, within CA264_07640at 1774.298 kb on - strand, within CA264_07640at 1774.298 kb on - strand, within CA264_07640at 1774.388 kb on + strand, within CA264_07640at 1774.388 kb on + strand, within CA264_07640at 1774.389 kb on - strand, within CA264_07640at 1774.389 kb on - strand, within CA264_07640at 1774.389 kb on - strand, within CA264_07640at 1774.436 kb on + strandat 1774.437 kb on - strandat 1774.437 kb on - strandat 1774.440 kb on + strandat 1774.441 kb on - strandat 1774.441 kb on - strandat 1774.442 kb on + strandat 1774.442 kb on + strandat 1774.443 kb on - strandat 1774.443 kb on - strandat 1774.443 kb on - strandat 1774.526 kb on + strandat 1774.585 kb on + strandat 1774.625 kb on + strandat 1774.626 kb on - strandat 1774.658 kb on + strandat 1774.666 kb on + strandat 1774.680 kb on + strandat 1774.680 kb on + strandat 1774.689 kb on + strandat 1774.690 kb on - strandat 1774.727 kb on - strandat 1774.851 kb on - strand, within CA264_07645at 1774.898 kb on + strand, within CA264_07645at 1774.898 kb on + strand, within CA264_07645at 1774.898 kb on + strand, within CA264_07645at 1774.899 kb on - strand, within CA264_07645at 1774.899 kb on - strand, within CA264_07645

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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1,772,427 + +0.7
1,772,608 + +1.0
1,772,608 + +0.4
1,772,609 - +0.0
1,772,618 + -0.3
1,772,628 - -2.0
1,772,637 + +1.0
1,772,654 + +1.0
1,772,656 + +0.1
1,772,656 + +0.2
1,772,657 - -0.6
1,772,657 - -0.4
1,772,687 - +0.2
1,772,723 + -0.1
1,772,723 + +0.7
1,772,725 + +0.6
1,772,923 - CA264_07635 0.18 +0.1
1,772,950 - CA264_07635 0.20 +1.0
1,772,971 + CA264_07635 0.22 +0.4
1,772,972 - CA264_07635 0.22 +0.1
1,772,972 - CA264_07635 0.22 +1.0
1,773,060 + CA264_07635 0.29 +0.2
1,773,060 + CA264_07635 0.29 +0.2
1,773,061 - CA264_07635 0.29 +0.3
1,773,061 - CA264_07635 0.29 +2.7
1,773,077 - CA264_07635 0.30 +1.3
1,773,077 - CA264_07635 0.30 +0.1
1,773,079 + CA264_07635 0.30 -0.2
1,773,080 - CA264_07635 0.30 +0.0
1,773,080 - CA264_07635 0.30 +0.6
1,773,200 + CA264_07635 0.39 -1.3
1,773,201 - CA264_07635 0.39 -0.3
1,773,246 - CA264_07635 0.43 +0.5
1,773,592 - CA264_07635 0.69 +0.0
1,773,593 + CA264_07635 0.69 +0.4
1,773,593 + CA264_07635 0.69 -0.9
1,773,695 - CA264_07635 0.77 +1.4
1,773,695 - CA264_07635 0.77 -0.4
1,773,750 - CA264_07635 0.81 -0.8
1,773,767 - CA264_07635 0.82 -0.3
1,773,824 - CA264_07635 0.87 +0.8
1,773,847 - CA264_07635 0.88 -1.3
1,773,955 + -1.4
1,773,955 + +1.2
1,773,955 + -1.9
1,773,955 + -0.5
1,774,008 + -1.4
1,774,032 + -0.8
1,774,080 - CA264_07640 0.17 +0.3
1,774,080 - CA264_07640 0.17 -0.4
1,774,080 - CA264_07640 0.17 +0.1
1,774,136 + CA264_07640 0.30 +1.6
1,774,157 + CA264_07640 0.35 -0.4
1,774,157 + CA264_07640 0.35 +0.4
1,774,203 + CA264_07640 0.46 +0.1
1,774,229 + CA264_07640 0.52 -0.4
1,774,244 + CA264_07640 0.55 -0.3
1,774,244 + CA264_07640 0.55 -0.5
1,774,297 + CA264_07640 0.68 -0.8
1,774,297 + CA264_07640 0.68 +0.3
1,774,298 - CA264_07640 0.68 -0.6
1,774,298 - CA264_07640 0.68 -0.6
1,774,298 - CA264_07640 0.68 +0.2
1,774,298 - CA264_07640 0.68 +0.1
1,774,298 - CA264_07640 0.68 +0.0
1,774,298 - CA264_07640 0.68 -0.6
1,774,388 + CA264_07640 0.89 +1.0
1,774,388 + CA264_07640 0.89 -0.2
1,774,389 - CA264_07640 0.89 +0.0
1,774,389 - CA264_07640 0.89 +0.1
1,774,389 - CA264_07640 0.89 -0.1
1,774,436 + -0.1
1,774,437 - +1.2
1,774,437 - +1.0
1,774,440 + -1.3
1,774,441 - +0.2
1,774,441 - +1.0
1,774,442 + -2.0
1,774,442 + -0.4
1,774,443 - +0.3
1,774,443 - +0.5
1,774,443 - +0.0
1,774,526 + +0.4
1,774,585 + -0.6
1,774,625 + +0.1
1,774,626 - -0.1
1,774,658 + +0.3
1,774,666 + +0.7
1,774,680 + -1.0
1,774,680 + -0.2
1,774,689 + -0.1
1,774,690 - -0.1
1,774,727 - +0.2
1,774,851 - CA264_07645 0.31 +0.2
1,774,898 + CA264_07645 0.42 -0.1
1,774,898 + CA264_07645 0.42 +0.1
1,774,898 + CA264_07645 0.42 +0.3
1,774,899 - CA264_07645 0.42 +1.1
1,774,899 - CA264_07645 0.42 -1.1

Or see this region's nucleotide sequence