Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_07475 and CA264_07480 are separated by 20 nucleotides CA264_07480 and CA264_07485 are separated by 3 nucleotides CA264_07485 and CA264_07490 are separated by 133 nucleotides
CA264_07475: CA264_07475 - hypothetical protein, at 1,730,961 to 1,732,550
_07475
CA264_07480: CA264_07480 - DUF58 domain-containing protein, at 1,732,571 to 1,733,482
_07480
CA264_07485: CA264_07485 - septal ring lytic transglycosylase RlpA family lipoprotein, at 1,733,486 to 1,733,899
_07485
CA264_07490: CA264_07490 - RNA-binding protein, at 1,734,033 to 1,734,362
_07490
Position (kb)
1732
1733
1734 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1731.573 kb on - strand, within CA264_07475 at 1731.648 kb on + strand, within CA264_07475 at 1731.655 kb on + strand, within CA264_07475 at 1731.761 kb on + strand, within CA264_07475 at 1731.765 kb on + strand, within CA264_07475 at 1731.765 kb on + strand, within CA264_07475 at 1731.765 kb on + strand, within CA264_07475 at 1731.766 kb on - strand, within CA264_07475 at 1731.768 kb on + strand, within CA264_07475 at 1731.768 kb on + strand, within CA264_07475 at 1731.769 kb on - strand, within CA264_07475 at 1731.904 kb on - strand, within CA264_07475 at 1731.925 kb on + strand, within CA264_07475 at 1731.926 kb on - strand, within CA264_07475 at 1732.125 kb on + strand, within CA264_07475 at 1732.126 kb on - strand, within CA264_07475 at 1732.126 kb on - strand, within CA264_07475 at 1732.339 kb on + strand, within CA264_07475 at 1732.352 kb on - strand, within CA264_07475 at 1732.378 kb on - strand, within CA264_07475 at 1732.378 kb on - strand, within CA264_07475 at 1732.437 kb on + strand at 1732.437 kb on + strand at 1732.438 kb on - strand at 1732.439 kb on + strand at 1732.440 kb on - strand at 1732.447 kb on + strand at 1732.447 kb on + strand at 1732.448 kb on - strand at 1732.475 kb on + strand at 1732.517 kb on - strand at 1732.593 kb on - strand at 1732.593 kb on - strand at 1732.605 kb on + strand at 1732.615 kb on + strand at 1732.616 kb on - strand at 1732.659 kb on + strand at 1732.714 kb on - strand, within CA264_07480 at 1732.780 kb on - strand, within CA264_07480 at 1732.842 kb on - strand, within CA264_07480 at 1732.910 kb on + strand, within CA264_07480 at 1732.910 kb on + strand, within CA264_07480 at 1732.910 kb on + strand, within CA264_07480 at 1733.203 kb on - strand, within CA264_07480 at 1733.205 kb on + strand, within CA264_07480 at 1733.205 kb on + strand, within CA264_07480 at 1733.206 kb on - strand, within CA264_07480 at 1733.209 kb on + strand, within CA264_07480 at 1733.263 kb on - strand, within CA264_07480 at 1733.338 kb on - strand, within CA264_07480 at 1733.453 kb on + strand at 1733.454 kb on - strand at 1733.495 kb on - strand at 1733.630 kb on + strand, within CA264_07485 at 1733.631 kb on - strand, within CA264_07485 at 1733.762 kb on - strand, within CA264_07485 at 1733.812 kb on - strand, within CA264_07485 at 1733.838 kb on + strand, within CA264_07485 at 1733.839 kb on - strand, within CA264_07485 at 1733.880 kb on - strand at 1733.891 kb on + strand at 1733.891 kb on + strand at 1733.894 kb on - strand at 1733.894 kb on - strand at 1733.900 kb on - strand at 1733.902 kb on + strand at 1733.903 kb on - strand at 1733.907 kb on + strand at 1733.974 kb on + strand at 1733.987 kb on + strand at 1733.987 kb on + strand at 1733.992 kb on + strand at 1734.233 kb on + strand, within CA264_07490 at 1734.350 kb on + strand at 1734.386 kb on + strand at 1734.386 kb on + strand at 1734.429 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 1,731,573 - CA264_07475 0.38 -0.2 1,731,648 + CA264_07475 0.43 +0.3 1,731,655 + CA264_07475 0.44 -1.3 1,731,761 + CA264_07475 0.50 -0.3 1,731,765 + CA264_07475 0.51 +0.6 1,731,765 + CA264_07475 0.51 -1.1 1,731,765 + CA264_07475 0.51 -0.1 1,731,766 - CA264_07475 0.51 -0.4 1,731,768 + CA264_07475 0.51 +0.9 1,731,768 + CA264_07475 0.51 -0.0 1,731,769 - CA264_07475 0.51 +0.4 1,731,904 - CA264_07475 0.59 +0.2 1,731,925 + CA264_07475 0.61 -0.6 1,731,926 - CA264_07475 0.61 -0.3 1,732,125 + CA264_07475 0.73 -1.0 1,732,126 - CA264_07475 0.73 -0.7 1,732,126 - CA264_07475 0.73 +0.2 1,732,339 + CA264_07475 0.87 +0.3 1,732,352 - CA264_07475 0.87 -0.2 1,732,378 - CA264_07475 0.89 +0.3 1,732,378 - CA264_07475 0.89 -1.0 1,732,437 + -0.9 1,732,437 + +1.3 1,732,438 - -0.3 1,732,439 + -0.1 1,732,440 - +0.6 1,732,447 + -0.0 1,732,447 + -0.1 1,732,448 - -0.6 1,732,475 + +0.2 1,732,517 - +0.5 1,732,593 - -0.4 1,732,593 - -1.2 1,732,605 + -1.0 1,732,615 + -0.1 1,732,616 - -0.4 1,732,659 + +1.6 1,732,714 - CA264_07480 0.16 +0.8 1,732,780 - CA264_07480 0.23 +0.2 1,732,842 - CA264_07480 0.30 -0.7 1,732,910 + CA264_07480 0.37 +0.8 1,732,910 + CA264_07480 0.37 +0.2 1,732,910 + CA264_07480 0.37 +1.3 1,733,203 - CA264_07480 0.69 -0.0 1,733,205 + CA264_07480 0.70 -0.0 1,733,205 + CA264_07480 0.70 +0.3 1,733,206 - CA264_07480 0.70 +2.2 1,733,209 + CA264_07480 0.70 +0.2 1,733,263 - CA264_07480 0.76 -0.4 1,733,338 - CA264_07480 0.84 -0.2 1,733,453 + +1.8 1,733,454 - -0.3 1,733,495 - +0.8 1,733,630 + CA264_07485 0.35 +1.1 1,733,631 - CA264_07485 0.35 +0.4 1,733,762 - CA264_07485 0.67 -0.0 1,733,812 - CA264_07485 0.79 +0.0 1,733,838 + CA264_07485 0.85 +0.7 1,733,839 - CA264_07485 0.85 +0.7 1,733,880 - -0.5 1,733,891 + +0.7 1,733,891 + +0.9 1,733,894 - -1.7 1,733,894 - -0.2 1,733,900 - +0.1 1,733,902 + +1.0 1,733,903 - -0.4 1,733,907 + +1.8 1,733,974 + -0.0 1,733,987 + -4.0 1,733,987 + -3.0 1,733,992 + -1.5 1,734,233 + CA264_07490 0.61 -3.6 1,734,350 + -1.0 1,734,386 + -0.9 1,734,386 + +1.2 1,734,429 - -2.0
Or see this region's nucleotide sequence