Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07355

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07345 and CA264_07350 are separated by 76 nucleotidesCA264_07350 and CA264_07355 are separated by 136 nucleotidesCA264_07355 and CA264_07360 are separated by 65 nucleotidesCA264_07360 and CA264_07365 are separated by 142 nucleotides CA264_07345: CA264_07345 - hypothetical protein, at 1,695,589 to 1,696,164 _07345 CA264_07350: CA264_07350 - hypothetical protein, at 1,696,241 to 1,696,936 _07350 CA264_07355: CA264_07355 - hypothetical protein, at 1,697,073 to 1,697,798 _07355 CA264_07360: CA264_07360 - hypothetical protein, at 1,697,864 to 1,698,100 _07360 CA264_07365: CA264_07365 - hypothetical protein, at 1,698,243 to 1,698,488 _07365 Position (kb) 1697 1698Strain fitness (log2 ratio) -1 0 1 2at 1696.087 kb on - strand, within CA264_07345at 1696.105 kb on - strand, within CA264_07345at 1696.106 kb on + strand, within CA264_07345at 1696.146 kb on + strandat 1696.147 kb on - strandat 1696.175 kb on + strandat 1696.176 kb on - strandat 1696.230 kb on - strandat 1696.242 kb on + strandat 1696.242 kb on + strandat 1696.243 kb on - strandat 1696.266 kb on + strandat 1696.267 kb on - strandat 1696.321 kb on - strand, within CA264_07350at 1696.426 kb on - strand, within CA264_07350at 1696.521 kb on + strand, within CA264_07350at 1696.554 kb on + strand, within CA264_07350at 1696.554 kb on + strand, within CA264_07350at 1696.624 kb on - strand, within CA264_07350at 1696.624 kb on - strand, within CA264_07350at 1696.681 kb on - strand, within CA264_07350at 1696.717 kb on - strand, within CA264_07350at 1696.717 kb on - strand, within CA264_07350at 1696.744 kb on + strand, within CA264_07350at 1696.819 kb on - strand, within CA264_07350at 1696.911 kb on + strandat 1696.912 kb on - strandat 1696.912 kb on - strandat 1696.915 kb on + strandat 1696.915 kb on + strandat 1696.916 kb on - strandat 1696.943 kb on - strandat 1696.948 kb on - strandat 1696.955 kb on + strandat 1696.955 kb on + strandat 1696.981 kb on - strandat 1697.072 kb on + strandat 1697.073 kb on - strandat 1697.102 kb on + strandat 1697.102 kb on + strandat 1697.103 kb on - strandat 1697.103 kb on - strandat 1697.107 kb on - strandat 1697.107 kb on - strandat 1697.266 kb on - strand, within CA264_07355at 1697.268 kb on - strand, within CA264_07355at 1697.291 kb on + strand, within CA264_07355at 1697.291 kb on + strand, within CA264_07355at 1697.292 kb on - strand, within CA264_07355at 1697.292 kb on - strand, within CA264_07355at 1697.292 kb on - strand, within CA264_07355at 1697.301 kb on + strand, within CA264_07355at 1697.302 kb on - strand, within CA264_07355at 1697.313 kb on + strand, within CA264_07355at 1697.314 kb on - strand, within CA264_07355at 1697.355 kb on + strand, within CA264_07355at 1697.355 kb on + strand, within CA264_07355at 1697.385 kb on + strand, within CA264_07355at 1697.509 kb on + strand, within CA264_07355at 1697.510 kb on - strand, within CA264_07355at 1697.569 kb on - strand, within CA264_07355at 1697.593 kb on - strand, within CA264_07355at 1697.640 kb on - strand, within CA264_07355at 1697.644 kb on - strand, within CA264_07355at 1697.668 kb on - strand, within CA264_07355at 1697.697 kb on + strand, within CA264_07355at 1697.709 kb on + strand, within CA264_07355at 1697.709 kb on + strand, within CA264_07355at 1697.712 kb on - strand, within CA264_07355at 1697.791 kb on - strandat 1697.796 kb on + strandat 1697.796 kb on + strandat 1697.850 kb on + strandat 1697.851 kb on - strandat 1697.968 kb on + strand, within CA264_07360at 1698.068 kb on - strand, within CA264_07360at 1698.073 kb on + strand, within CA264_07360at 1698.104 kb on + strandat 1698.104 kb on + strandat 1698.105 kb on - strandat 1698.105 kb on - strandat 1698.109 kb on + strandat 1698.109 kb on + strandat 1698.116 kb on - strandat 1698.116 kb on - strandat 1698.188 kb on + strandat 1698.189 kb on - strandat 1698.189 kb on - strandat 1698.189 kb on - strandat 1698.218 kb on + strandat 1698.219 kb on - strandat 1698.232 kb on - strandat 1698.268 kb on + strand, within CA264_07365at 1698.417 kb on - strand, within CA264_07365at 1698.419 kb on + strand, within CA264_07365at 1698.420 kb on - strand, within CA264_07365at 1698.420 kb on - strand, within CA264_07365at 1698.441 kb on - strand, within CA264_07365at 1698.473 kb on + strandat 1698.527 kb on - strandat 1698.527 kb on - strandat 1698.547 kb on + strandat 1698.597 kb on + strandat 1698.689 kb on + strandat 1698.689 kb on + strandat 1698.690 kb on - strandat 1698.690 kb on - strandat 1698.691 kb on + strandat 1698.691 kb on + strandat 1698.691 kb on + strandat 1698.692 kb on - strandat 1698.692 kb on - strandat 1698.695 kb on + strandat 1698.695 kb on + strandat 1698.709 kb on + strandat 1698.787 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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1,696,087 - CA264_07345 0.86 +0.0
1,696,105 - CA264_07345 0.90 +0.3
1,696,106 + CA264_07345 0.90 -0.1
1,696,146 + -0.3
1,696,147 - +0.4
1,696,175 + -1.2
1,696,176 - +0.7
1,696,230 - +0.7
1,696,242 + -0.3
1,696,242 + +0.3
1,696,243 - +0.8
1,696,266 + +0.0
1,696,267 - -0.0
1,696,321 - CA264_07350 0.11 +0.3
1,696,426 - CA264_07350 0.27 +0.3
1,696,521 + CA264_07350 0.40 +0.5
1,696,554 + CA264_07350 0.45 +0.2
1,696,554 + CA264_07350 0.45 -0.7
1,696,624 - CA264_07350 0.55 +0.5
1,696,624 - CA264_07350 0.55 -0.0
1,696,681 - CA264_07350 0.63 +0.6
1,696,717 - CA264_07350 0.68 +0.0
1,696,717 - CA264_07350 0.68 +0.7
1,696,744 + CA264_07350 0.72 +0.3
1,696,819 - CA264_07350 0.83 -0.3
1,696,911 + +0.3
1,696,912 - -0.9
1,696,912 - +0.1
1,696,915 + +1.5
1,696,915 + +0.4
1,696,916 - -0.5
1,696,943 - +0.8
1,696,948 - +0.8
1,696,955 + -0.3
1,696,955 + +0.5
1,696,981 - +0.9
1,697,072 + +0.7
1,697,073 - +0.6
1,697,102 + +0.4
1,697,102 + +0.2
1,697,103 - +0.4
1,697,103 - +0.3
1,697,107 - +0.6
1,697,107 - +0.0
1,697,266 - CA264_07355 0.27 +0.2
1,697,268 - CA264_07355 0.27 +0.3
1,697,291 + CA264_07355 0.30 -0.5
1,697,291 + CA264_07355 0.30 +0.7
1,697,292 - CA264_07355 0.30 +0.4
1,697,292 - CA264_07355 0.30 +0.0
1,697,292 - CA264_07355 0.30 -0.2
1,697,301 + CA264_07355 0.31 +0.3
1,697,302 - CA264_07355 0.32 +0.5
1,697,313 + CA264_07355 0.33 +0.3
1,697,314 - CA264_07355 0.33 +1.1
1,697,355 + CA264_07355 0.39 +1.0
1,697,355 + CA264_07355 0.39 +0.2
1,697,385 + CA264_07355 0.43 +1.0
1,697,509 + CA264_07355 0.60 +2.6
1,697,510 - CA264_07355 0.60 +1.0
1,697,569 - CA264_07355 0.68 +0.5
1,697,593 - CA264_07355 0.72 -0.6
1,697,640 - CA264_07355 0.78 +0.1
1,697,644 - CA264_07355 0.79 -0.3
1,697,668 - CA264_07355 0.82 +0.8
1,697,697 + CA264_07355 0.86 +0.6
1,697,709 + CA264_07355 0.88 +1.3
1,697,709 + CA264_07355 0.88 +2.3
1,697,712 - CA264_07355 0.88 +0.4
1,697,791 - -0.3
1,697,796 + -0.2
1,697,796 + +0.2
1,697,850 + +0.2
1,697,851 - -0.2
1,697,968 + CA264_07360 0.44 +0.7
1,698,068 - CA264_07360 0.86 -0.2
1,698,073 + CA264_07360 0.88 +0.5
1,698,104 + +0.2
1,698,104 + -0.2
1,698,105 - -1.1
1,698,105 - +1.7
1,698,109 + +0.4
1,698,109 + +0.4
1,698,116 - -0.7
1,698,116 - -0.7
1,698,188 + +0.1
1,698,189 - -0.5
1,698,189 - -0.3
1,698,189 - -0.0
1,698,218 + -0.6
1,698,219 - -0.4
1,698,232 - +0.8
1,698,268 + CA264_07365 0.10 -0.6
1,698,417 - CA264_07365 0.71 +0.4
1,698,419 + CA264_07365 0.72 -0.0
1,698,420 - CA264_07365 0.72 +0.7
1,698,420 - CA264_07365 0.72 -0.2
1,698,441 - CA264_07365 0.80 +1.2
1,698,473 + -0.3
1,698,527 - +0.6
1,698,527 - +0.4
1,698,547 + -0.6
1,698,597 + -1.2
1,698,689 + -0.2
1,698,689 + +1.0
1,698,690 - +0.1
1,698,690 - -0.6
1,698,691 + +1.5
1,698,691 + +0.2
1,698,691 + +0.4
1,698,692 - +0.3
1,698,692 - +0.4
1,698,695 + +1.1
1,698,695 + -0.4
1,698,709 + -0.1
1,698,787 + +0.2

Or see this region's nucleotide sequence