Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07075

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07070 and CA264_07075 are separated by 237 nucleotidesCA264_07075 and CA264_07080 are separated by 425 nucleotides CA264_07070: CA264_07070 - DNA polymerase III subunit epsilon, at 1,629,160 to 1,629,714 _07070 CA264_07075: CA264_07075 - hypothetical protein, at 1,629,952 to 1,630,257 _07075 CA264_07080: CA264_07080 - oxidoreductase, at 1,630,683 to 1,631,579 _07080 Position (kb) 1629 1630 1631Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1628.968 kb on + strandat 1629.286 kb on + strand, within CA264_07070at 1629.287 kb on - strand, within CA264_07070at 1629.462 kb on + strand, within CA264_07070at 1629.473 kb on + strand, within CA264_07070at 1629.473 kb on + strand, within CA264_07070at 1629.474 kb on - strand, within CA264_07070at 1629.474 kb on - strand, within CA264_07070at 1629.702 kb on - strandat 1629.742 kb on + strandat 1629.743 kb on - strandat 1629.743 kb on - strandat 1629.743 kb on - strandat 1629.747 kb on + strandat 1629.798 kb on + strandat 1629.856 kb on + strandat 1629.856 kb on + strandat 1629.857 kb on - strandat 1629.857 kb on - strandat 1629.857 kb on - strandat 1629.857 kb on - strandat 1629.860 kb on + strandat 1629.860 kb on + strandat 1629.860 kb on + strandat 1629.860 kb on + strandat 1629.860 kb on + strandat 1629.861 kb on - strandat 1629.861 kb on - strandat 1629.861 kb on - strandat 1629.870 kb on - strandat 1629.880 kb on - strandat 1629.880 kb on - strandat 1629.880 kb on - strandat 1629.888 kb on + strandat 1629.888 kb on + strandat 1630.005 kb on + strand, within CA264_07075at 1630.005 kb on + strand, within CA264_07075at 1630.026 kb on - strand, within CA264_07075at 1630.051 kb on + strand, within CA264_07075at 1630.137 kb on + strand, within CA264_07075at 1630.137 kb on + strand, within CA264_07075at 1630.137 kb on + strand, within CA264_07075at 1630.138 kb on - strand, within CA264_07075at 1630.185 kb on + strand, within CA264_07075at 1630.186 kb on - strand, within CA264_07075at 1630.269 kb on + strandat 1630.270 kb on - strandat 1630.299 kb on + strandat 1630.317 kb on + strandat 1630.318 kb on - strandat 1630.341 kb on - strandat 1630.346 kb on + strandat 1630.346 kb on + strandat 1630.347 kb on - strandat 1630.347 kb on - strandat 1630.348 kb on + strandat 1630.348 kb on + strandat 1630.370 kb on + strandat 1630.371 kb on - strandat 1630.427 kb on + strandat 1630.442 kb on + strandat 1630.443 kb on - strandat 1630.444 kb on + strandat 1630.452 kb on - strandat 1630.491 kb on - strandat 1630.558 kb on + strandat 1630.620 kb on - strandat 1630.649 kb on + strandat 1630.653 kb on + strandat 1630.653 kb on + strandat 1630.655 kb on + strandat 1630.656 kb on - strandat 1630.656 kb on - strandat 1630.656 kb on - strandat 1630.656 kb on - strandat 1630.660 kb on - strandat 1630.660 kb on - strandat 1630.660 kb on - strandat 1630.660 kb on - strandat 1630.660 kb on - strandat 1630.660 kb on - strandat 1630.660 kb on - strandat 1630.660 kb on - strandat 1630.661 kb on + strandat 1630.661 kb on + strandat 1630.662 kb on - strandat 1630.662 kb on - strandat 1630.665 kb on + strandat 1630.666 kb on - strandat 1630.666 kb on - strandat 1630.666 kb on - strandat 1630.699 kb on + strandat 1630.704 kb on - strandat 1630.714 kb on - strandat 1630.734 kb on + strandat 1630.896 kb on + strand, within CA264_07080at 1630.932 kb on - strand, within CA264_07080at 1631.065 kb on + strand, within CA264_07080at 1631.077 kb on - strand, within CA264_07080at 1631.077 kb on - strand, within CA264_07080at 1631.077 kb on - strand, within CA264_07080at 1631.085 kb on + strand, within CA264_07080at 1631.113 kb on - strand, within CA264_07080at 1631.146 kb on + strand, within CA264_07080at 1631.147 kb on - strand, within CA264_07080at 1631.151 kb on + strand, within CA264_07080at 1631.211 kb on + strand, within CA264_07080at 1631.212 kb on - strand, within CA264_07080

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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1,628,968 + -0.5
1,629,286 + CA264_07070 0.23 +0.4
1,629,287 - CA264_07070 0.23 -2.8
1,629,462 + CA264_07070 0.54 +0.2
1,629,473 + CA264_07070 0.56 +0.3
1,629,473 + CA264_07070 0.56 -1.7
1,629,474 - CA264_07070 0.57 -2.2
1,629,474 - CA264_07070 0.57 +1.2
1,629,702 - -1.0
1,629,742 + -0.6
1,629,743 - +0.3
1,629,743 - -1.8
1,629,743 - -1.3
1,629,747 + +3.6
1,629,798 + +0.5
1,629,856 + +0.2
1,629,856 + -0.6
1,629,857 - +1.0
1,629,857 - -2.2
1,629,857 - -0.7
1,629,857 - +0.1
1,629,860 + +0.4
1,629,860 + +1.8
1,629,860 + +0.1
1,629,860 + -0.3
1,629,860 + -0.3
1,629,861 - -2.0
1,629,861 - -1.3
1,629,861 - -0.9
1,629,870 - -1.3
1,629,880 - -1.7
1,629,880 - -1.6
1,629,880 - -0.6
1,629,888 + -0.4
1,629,888 + +1.4
1,630,005 + CA264_07075 0.17 +0.8
1,630,005 + CA264_07075 0.17 +0.1
1,630,026 - CA264_07075 0.24 -0.7
1,630,051 + CA264_07075 0.32 -0.3
1,630,137 + CA264_07075 0.60 +0.5
1,630,137 + CA264_07075 0.60 +0.2
1,630,137 + CA264_07075 0.60 +0.1
1,630,138 - CA264_07075 0.61 -0.1
1,630,185 + CA264_07075 0.76 +0.8
1,630,186 - CA264_07075 0.76 +0.0
1,630,269 + +1.0
1,630,270 - +0.0
1,630,299 + +1.0
1,630,317 + +0.0
1,630,318 - +0.6
1,630,341 - +1.3
1,630,346 + +0.1
1,630,346 + +0.1
1,630,347 - +2.6
1,630,347 - +1.1
1,630,348 + +1.0
1,630,348 + +0.4
1,630,370 + +0.3
1,630,371 - +1.4
1,630,427 + +0.5
1,630,442 + +0.1
1,630,443 - +0.5
1,630,444 + +1.5
1,630,452 - +1.6
1,630,491 - +0.8
1,630,558 + -0.6
1,630,620 - +0.3
1,630,649 + -0.5
1,630,653 + -0.6
1,630,653 + -0.6
1,630,655 + -0.4
1,630,656 - +0.5
1,630,656 - +0.6
1,630,656 - -0.1
1,630,656 - +0.2
1,630,660 - +0.6
1,630,660 - +1.0
1,630,660 - +0.2
1,630,660 - +0.4
1,630,660 - +0.2
1,630,660 - +1.1
1,630,660 - +0.4
1,630,660 - +1.0
1,630,661 + -0.6
1,630,661 + +0.0
1,630,662 - +0.3
1,630,662 - +1.0
1,630,665 + +0.5
1,630,666 - +0.2
1,630,666 - +0.1
1,630,666 - +1.0
1,630,699 + -0.8
1,630,704 - +0.5
1,630,714 - +1.1
1,630,734 + +0.1
1,630,896 + CA264_07080 0.24 -0.3
1,630,932 - CA264_07080 0.28 +0.4
1,631,065 + CA264_07080 0.43 +1.3
1,631,077 - CA264_07080 0.44 -0.6
1,631,077 - CA264_07080 0.44 -0.6
1,631,077 - CA264_07080 0.44 +0.2
1,631,085 + CA264_07080 0.45 -0.0
1,631,113 - CA264_07080 0.48 -0.3
1,631,146 + CA264_07080 0.52 +1.0
1,631,147 - CA264_07080 0.52 +0.6
1,631,151 + CA264_07080 0.52 -0.3
1,631,211 + CA264_07080 0.59 -0.4
1,631,212 - CA264_07080 0.59 +0.1

Or see this region's nucleotide sequence