Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06680

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06675 and CA264_06680 are separated by 586 nucleotidesCA264_06680 and CA264_06685 are separated by 94 nucleotides CA264_06675: CA264_06675 - AraC family transcriptional regulator, at 1,539,380 to 1,540,309 _06675 CA264_06680: CA264_06680 - 5S ribosomal RNA, at 1,540,896 to 1,541,007 _06680 CA264_06685: CA264_06685 - 23S ribosomal RNA, at 1,541,102 to 1,543,987 _06685 Position (kb) 1540 1541 1542Strain fitness (log2 ratio) -1 0 1at 1539.926 kb on - strand, within CA264_06675at 1539.976 kb on + strand, within CA264_06675at 1539.989 kb on + strand, within CA264_06675at 1540.071 kb on - strand, within CA264_06675at 1540.082 kb on + strand, within CA264_06675at 1540.099 kb on + strand, within CA264_06675at 1540.099 kb on + strand, within CA264_06675at 1540.100 kb on - strand, within CA264_06675at 1540.100 kb on - strand, within CA264_06675at 1540.100 kb on - strand, within CA264_06675at 1540.154 kb on + strand, within CA264_06675at 1540.154 kb on + strand, within CA264_06675at 1540.154 kb on + strand, within CA264_06675at 1540.223 kb on + strandat 1540.247 kb on - strandat 1540.262 kb on + strandat 1540.262 kb on + strandat 1540.272 kb on - strandat 1540.333 kb on + strandat 1540.334 kb on - strandat 1540.338 kb on - strandat 1540.338 kb on - strandat 1540.340 kb on - strandat 1540.389 kb on + strandat 1540.390 kb on - strandat 1540.396 kb on + strandat 1540.397 kb on - strandat 1540.397 kb on - strandat 1540.400 kb on - strandat 1540.400 kb on - strandat 1540.403 kb on + strandat 1540.417 kb on - strandat 1540.441 kb on + strandat 1540.442 kb on - strandat 1540.442 kb on - strandat 1540.448 kb on + strandat 1540.470 kb on - strandat 1540.477 kb on - strandat 1540.483 kb on - strandat 1540.499 kb on + strandat 1540.500 kb on - strandat 1540.574 kb on + strandat 1540.575 kb on - strandat 1540.578 kb on + strandat 1540.579 kb on - strandat 1540.597 kb on - strandat 1540.600 kb on - strandat 1540.601 kb on + strandat 1540.601 kb on + strandat 1540.617 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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1,539,926 - CA264_06675 0.59 -1.0
1,539,976 + CA264_06675 0.64 +0.3
1,539,989 + CA264_06675 0.65 -0.1
1,540,071 - CA264_06675 0.74 -0.4
1,540,082 + CA264_06675 0.75 +0.5
1,540,099 + CA264_06675 0.77 +0.9
1,540,099 + CA264_06675 0.77 +1.1
1,540,100 - CA264_06675 0.77 -0.1
1,540,100 - CA264_06675 0.77 -0.0
1,540,100 - CA264_06675 0.77 -0.5
1,540,154 + CA264_06675 0.83 +1.5
1,540,154 + CA264_06675 0.83 +0.9
1,540,154 + CA264_06675 0.83 +0.3
1,540,223 + -0.3
1,540,247 - -0.2
1,540,262 + +0.3
1,540,262 + +0.5
1,540,272 - +0.5
1,540,333 + +1.6
1,540,334 - -0.3
1,540,338 - +1.6
1,540,338 - +0.0
1,540,340 - -0.7
1,540,389 + +1.0
1,540,390 - +1.1
1,540,396 + +0.5
1,540,397 - -0.2
1,540,397 - -0.5
1,540,400 - +0.4
1,540,400 - +0.3
1,540,403 + +0.1
1,540,417 - -0.7
1,540,441 + -0.4
1,540,442 - +1.7
1,540,442 - +0.3
1,540,448 + -0.4
1,540,470 - -0.5
1,540,477 - +0.9
1,540,483 - -0.7
1,540,499 + -0.1
1,540,500 - -0.3
1,540,574 + +0.8
1,540,575 - +0.9
1,540,578 + +0.5
1,540,579 - -1.0
1,540,597 - +0.4
1,540,600 - -0.0
1,540,601 + -0.7
1,540,601 + +0.3
1,540,617 + +0.7

Or see this region's nucleotide sequence