Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_06675 and CA264_06680 are separated by 586 nucleotides CA264_06680 and CA264_06685 are separated by 94 nucleotides
CA264_06675: CA264_06675 - AraC family transcriptional regulator, at 1,539,380 to 1,540,309
_06675
CA264_06680: CA264_06680 - 5S ribosomal RNA, at 1,540,896 to 1,541,007
_06680
CA264_06685: CA264_06685 - 23S ribosomal RNA, at 1,541,102 to 1,543,987
_06685
Position (kb)
1540
1541
1542 Strain fitness (log2 ratio)
-1
0
1 at 1539.926 kb on - strand, within CA264_06675 at 1539.976 kb on + strand, within CA264_06675 at 1539.989 kb on + strand, within CA264_06675 at 1540.071 kb on - strand, within CA264_06675 at 1540.082 kb on + strand, within CA264_06675 at 1540.099 kb on + strand, within CA264_06675 at 1540.099 kb on + strand, within CA264_06675 at 1540.100 kb on - strand, within CA264_06675 at 1540.100 kb on - strand, within CA264_06675 at 1540.100 kb on - strand, within CA264_06675 at 1540.154 kb on + strand, within CA264_06675 at 1540.154 kb on + strand, within CA264_06675 at 1540.154 kb on + strand, within CA264_06675 at 1540.223 kb on + strand at 1540.247 kb on - strand at 1540.262 kb on + strand at 1540.262 kb on + strand at 1540.272 kb on - strand at 1540.333 kb on + strand at 1540.334 kb on - strand at 1540.338 kb on - strand at 1540.338 kb on - strand at 1540.340 kb on - strand at 1540.389 kb on + strand at 1540.390 kb on - strand at 1540.396 kb on + strand at 1540.397 kb on - strand at 1540.397 kb on - strand at 1540.400 kb on - strand at 1540.400 kb on - strand at 1540.403 kb on + strand at 1540.417 kb on - strand at 1540.441 kb on + strand at 1540.442 kb on - strand at 1540.442 kb on - strand at 1540.448 kb on + strand at 1540.470 kb on - strand at 1540.477 kb on - strand at 1540.483 kb on - strand at 1540.499 kb on + strand at 1540.500 kb on - strand at 1540.574 kb on + strand at 1540.575 kb on - strand at 1540.578 kb on + strand at 1540.579 kb on - strand at 1540.597 kb on - strand at 1540.600 kb on - strand at 1540.601 kb on + strand at 1540.601 kb on + strand at 1540.617 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 1,539,926 - CA264_06675 0.59 -1.0 1,539,976 + CA264_06675 0.64 +0.3 1,539,989 + CA264_06675 0.65 -0.1 1,540,071 - CA264_06675 0.74 -0.4 1,540,082 + CA264_06675 0.75 +0.5 1,540,099 + CA264_06675 0.77 +0.9 1,540,099 + CA264_06675 0.77 +1.1 1,540,100 - CA264_06675 0.77 -0.1 1,540,100 - CA264_06675 0.77 -0.0 1,540,100 - CA264_06675 0.77 -0.5 1,540,154 + CA264_06675 0.83 +1.5 1,540,154 + CA264_06675 0.83 +0.9 1,540,154 + CA264_06675 0.83 +0.3 1,540,223 + -0.3 1,540,247 - -0.2 1,540,262 + +0.3 1,540,262 + +0.5 1,540,272 - +0.5 1,540,333 + +1.6 1,540,334 - -0.3 1,540,338 - +1.6 1,540,338 - +0.0 1,540,340 - -0.7 1,540,389 + +1.0 1,540,390 - +1.1 1,540,396 + +0.5 1,540,397 - -0.2 1,540,397 - -0.5 1,540,400 - +0.4 1,540,400 - +0.3 1,540,403 + +0.1 1,540,417 - -0.7 1,540,441 + -0.4 1,540,442 - +1.7 1,540,442 - +0.3 1,540,448 + -0.4 1,540,470 - -0.5 1,540,477 - +0.9 1,540,483 - -0.7 1,540,499 + -0.1 1,540,500 - -0.3 1,540,574 + +0.8 1,540,575 - +0.9 1,540,578 + +0.5 1,540,579 - -1.0 1,540,597 - +0.4 1,540,600 - -0.0 1,540,601 + -0.7 1,540,601 + +0.3 1,540,617 + +0.7
Or see this region's nucleotide sequence