Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04870

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04860 and CA264_04865 are separated by 135 nucleotidesCA264_04865 and CA264_04870 are separated by 98 nucleotidesCA264_04870 and CA264_04875 are separated by 111 nucleotidesCA264_04875 and CA264_04880 are separated by 138 nucleotides CA264_04860: CA264_04860 - tRNA-Met, at 1,128,788 to 1,128,864 _04860 CA264_04865: CA264_04865 - ATPase, at 1,129,000 to 1,129,404 _04865 CA264_04870: CA264_04870 - permease, at 1,129,503 to 1,130,915 _04870 CA264_04875: CA264_04875 - 30S ribosomal protein S15, at 1,131,027 to 1,131,302 _04875 CA264_04880: CA264_04880 - polyribonucleotide nucleotidyltransferase, at 1,131,441 to 1,133,579 _04880 Position (kb) 1129 1130 1131Strain fitness (log2 ratio) -2 -1 0 1 2at 1128.506 kb on + strandat 1128.507 kb on - strandat 1128.561 kb on + strandat 1128.562 kb on - strandat 1128.562 kb on - strandat 1128.565 kb on + strandat 1128.565 kb on + strandat 1128.566 kb on - strandat 1128.566 kb on - strandat 1128.569 kb on + strandat 1128.569 kb on + strandat 1128.570 kb on - strandat 1128.582 kb on + strandat 1128.606 kb on - strandat 1128.944 kb on + strandat 1128.963 kb on + strandat 1128.971 kb on + strandat 1128.976 kb on - strandat 1128.987 kb on + strandat 1128.996 kb on + strandat 1129.011 kb on + strandat 1129.012 kb on - strandat 1129.041 kb on + strand, within CA264_04865at 1129.041 kb on + strand, within CA264_04865at 1129.042 kb on - strand, within CA264_04865at 1129.073 kb on - strand, within CA264_04865at 1129.077 kb on - strand, within CA264_04865at 1129.077 kb on - strand, within CA264_04865at 1129.124 kb on + strand, within CA264_04865at 1129.124 kb on + strand, within CA264_04865at 1129.259 kb on - strand, within CA264_04865at 1129.322 kb on - strand, within CA264_04865at 1129.391 kb on + strandat 1129.420 kb on - strandat 1129.420 kb on - strandat 1129.428 kb on - strandat 1129.454 kb on + strandat 1129.463 kb on - strandat 1129.477 kb on - strandat 1129.495 kb on + strandat 1130.923 kb on - strandat 1130.925 kb on - strandat 1130.927 kb on - strandat 1130.982 kb on + strandat 1131.286 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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1,128,506 + +1.2
1,128,507 - +0.3
1,128,561 + +1.5
1,128,562 - -1.1
1,128,562 - +0.1
1,128,565 + +1.0
1,128,565 + +0.6
1,128,566 - +1.3
1,128,566 - -0.5
1,128,569 + +1.2
1,128,569 + +0.9
1,128,570 - -0.6
1,128,582 + +0.4
1,128,606 - +0.3
1,128,944 + +1.0
1,128,963 + -0.1
1,128,971 + +1.7
1,128,976 - +0.1
1,128,987 + -0.8
1,128,996 + -0.5
1,129,011 + +1.0
1,129,012 - -0.5
1,129,041 + CA264_04865 0.10 -2.0
1,129,041 + CA264_04865 0.10 -1.4
1,129,042 - CA264_04865 0.10 -0.5
1,129,073 - CA264_04865 0.18 -0.8
1,129,077 - CA264_04865 0.19 -1.2
1,129,077 - CA264_04865 0.19 -0.3
1,129,124 + CA264_04865 0.31 -0.4
1,129,124 + CA264_04865 0.31 -0.5
1,129,259 - CA264_04865 0.64 -2.3
1,129,322 - CA264_04865 0.80 +0.2
1,129,391 + -1.7
1,129,420 - -0.7
1,129,420 - -0.2
1,129,428 - -1.7
1,129,454 + +2.5
1,129,463 - -1.9
1,129,477 - +0.5
1,129,495 + -0.3
1,130,923 - +0.6
1,130,925 - -0.3
1,130,927 - -0.3
1,130,982 + +0.2
1,131,286 + +0.4

Or see this region's nucleotide sequence