Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04275

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04265 and CA264_04270 are separated by 53 nucleotidesCA264_04270 and CA264_04275 are separated by 64 nucleotidesCA264_04275 and CA264_04280 are separated by 609 nucleotides CA264_04265: CA264_04265 - NADH-quinone oxidoreductase subunit B, at 986,482 to 987,120 _04265 CA264_04270: CA264_04270 - NADH:ubiquinone oxidoreductase subunit A, at 987,174 to 987,605 _04270 CA264_04275: CA264_04275 - histidine kinase, at 987,670 to 988,101 _04275 CA264_04280: CA264_04280 - hypothetical protein, at 988,711 to 989,112 _04280 Position (kb) 987 988 989Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 986.684 kb on + strand, within CA264_04265at 986.729 kb on + strand, within CA264_04265at 986.729 kb on + strand, within CA264_04265at 986.729 kb on + strand, within CA264_04265at 986.729 kb on + strand, within CA264_04265at 986.729 kb on + strand, within CA264_04265at 986.729 kb on + strand, within CA264_04265at 986.730 kb on - strand, within CA264_04265at 986.730 kb on - strand, within CA264_04265at 986.730 kb on - strand, within CA264_04265at 986.730 kb on - strand, within CA264_04265at 986.730 kb on - strand, within CA264_04265at 986.734 kb on - strand, within CA264_04265at 986.832 kb on + strand, within CA264_04265at 986.887 kb on + strand, within CA264_04265at 986.919 kb on - strand, within CA264_04265at 987.059 kb on + strandat 987.135 kb on - strandat 987.146 kb on - strandat 987.164 kb on - strandat 987.164 kb on - strandat 987.164 kb on - strandat 987.166 kb on - strandat 987.166 kb on - strandat 987.168 kb on + strandat 987.168 kb on + strandat 987.169 kb on - strandat 987.206 kb on - strandat 987.265 kb on + strand, within CA264_04270at 987.266 kb on - strand, within CA264_04270at 987.266 kb on - strand, within CA264_04270at 987.406 kb on + strand, within CA264_04270at 987.508 kb on + strand, within CA264_04270at 987.508 kb on + strand, within CA264_04270at 987.509 kb on - strand, within CA264_04270at 987.594 kb on + strandat 987.594 kb on + strandat 987.628 kb on - strandat 987.684 kb on + strandat 987.684 kb on + strandat 987.685 kb on - strandat 987.686 kb on + strandat 987.687 kb on - strandat 987.731 kb on + strand, within CA264_04275at 987.731 kb on + strand, within CA264_04275at 987.732 kb on - strand, within CA264_04275at 987.748 kb on + strand, within CA264_04275at 987.748 kb on + strand, within CA264_04275at 987.749 kb on - strand, within CA264_04275at 987.750 kb on + strand, within CA264_04275at 987.757 kb on + strand, within CA264_04275at 987.758 kb on - strand, within CA264_04275at 987.826 kb on - strand, within CA264_04275at 987.985 kb on + strand, within CA264_04275at 988.028 kb on + strand, within CA264_04275at 988.029 kb on - strand, within CA264_04275at 988.210 kb on + strandat 988.250 kb on + strandat 988.307 kb on + strandat 988.342 kb on + strandat 988.343 kb on - strandat 988.343 kb on - strandat 988.344 kb on + strandat 988.345 kb on - strandat 988.348 kb on + strandat 988.348 kb on + strandat 988.349 kb on - strandat 988.391 kb on - strandat 988.448 kb on - strandat 988.451 kb on + strandat 988.468 kb on - strandat 988.468 kb on - strandat 988.529 kb on + strandat 988.530 kb on - strandat 988.532 kb on + strandat 988.564 kb on - strandat 988.615 kb on + strandat 988.620 kb on + strandat 988.620 kb on + strandat 988.620 kb on + strandat 988.627 kb on + strandat 988.629 kb on + strandat 988.629 kb on + strandat 988.630 kb on - strandat 988.630 kb on - strandat 988.630 kb on - strandat 988.630 kb on - strandat 988.656 kb on + strandat 988.657 kb on - strandat 988.663 kb on - strandat 988.672 kb on - strandat 988.674 kb on + strandat 988.674 kb on + strandat 988.674 kb on + strandat 988.674 kb on + strandat 988.681 kb on + strandat 988.681 kb on + strandat 988.682 kb on - strandat 988.683 kb on + strandat 988.683 kb on + strandat 988.684 kb on - strandat 988.684 kb on - strandat 988.684 kb on - strandat 988.686 kb on + strandat 988.687 kb on - strandat 988.693 kb on + strandat 988.706 kb on + strandat 988.707 kb on - strandat 988.707 kb on - strandat 988.711 kb on - strandat 988.842 kb on + strand, within CA264_04280at 989.090 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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986,684 + CA264_04265 0.32 +1.3
986,729 + CA264_04265 0.39 -1.5
986,729 + CA264_04265 0.39 -1.5
986,729 + CA264_04265 0.39 +2.0
986,729 + CA264_04265 0.39 -1.5
986,729 + CA264_04265 0.39 -0.3
986,729 + CA264_04265 0.39 +0.2
986,730 - CA264_04265 0.39 -0.7
986,730 - CA264_04265 0.39 -1.5
986,730 - CA264_04265 0.39 +0.2
986,730 - CA264_04265 0.39 -0.0
986,730 - CA264_04265 0.39 -0.4
986,734 - CA264_04265 0.39 +0.2
986,832 + CA264_04265 0.55 -1.5
986,887 + CA264_04265 0.63 +0.6
986,919 - CA264_04265 0.68 +0.0
987,059 + -1.1
987,135 - -0.3
987,146 - +1.1
987,164 - -0.2
987,164 - +0.0
987,164 - +0.3
987,166 - +0.3
987,166 - -0.2
987,168 + +1.0
987,168 + -1.1
987,169 - -0.4
987,206 - +0.2
987,265 + CA264_04270 0.21 -2.1
987,266 - CA264_04270 0.21 -0.4
987,266 - CA264_04270 0.21 -1.1
987,406 + CA264_04270 0.54 -0.0
987,508 + CA264_04270 0.77 -0.3
987,508 + CA264_04270 0.77 +0.0
987,509 - CA264_04270 0.78 -0.2
987,594 + -0.6
987,594 + +0.0
987,628 - +0.6
987,684 + -1.5
987,684 + -0.6
987,685 - +1.1
987,686 + -1.2
987,687 - +1.4
987,731 + CA264_04275 0.14 -1.0
987,731 + CA264_04275 0.14 -0.7
987,732 - CA264_04275 0.14 -0.7
987,748 + CA264_04275 0.18 +0.2
987,748 + CA264_04275 0.18 +1.2
987,749 - CA264_04275 0.18 -0.3
987,750 + CA264_04275 0.19 -1.7
987,757 + CA264_04275 0.20 -1.5
987,758 - CA264_04275 0.20 +1.0
987,826 - CA264_04275 0.36 +0.2
987,985 + CA264_04275 0.73 -0.2
988,028 + CA264_04275 0.83 -1.4
988,029 - CA264_04275 0.83 -0.5
988,210 + -1.2
988,250 + -2.2
988,307 + -0.8
988,342 + +0.1
988,343 - -0.4
988,343 - -0.9
988,344 + +0.7
988,345 - -0.7
988,348 + -1.5
988,348 + -1.0
988,349 - -0.3
988,391 - -1.3
988,448 - -0.4
988,451 + -0.4
988,468 - -0.0
988,468 - -0.8
988,529 + -1.3
988,530 - -0.5
988,532 + -1.1
988,564 - -0.0
988,615 + -1.8
988,620 + -0.7
988,620 + -0.9
988,620 + -1.2
988,627 + -2.0
988,629 + -2.8
988,629 + -2.0
988,630 - -0.8
988,630 - -1.1
988,630 - -0.8
988,630 - -1.1
988,656 + -0.4
988,657 - +0.4
988,663 - -1.0
988,672 - -0.5
988,674 + -0.4
988,674 + +0.2
988,674 + -0.9
988,674 + -1.4
988,681 + -0.8
988,681 + -3.3
988,682 - -0.4
988,683 + -2.6
988,683 + -1.7
988,684 - -0.7
988,684 - -1.0
988,684 - -0.2
988,686 + -2.3
988,687 - -1.0
988,693 + -2.1
988,706 + -2.2
988,707 - -1.1
988,707 - -0.6
988,711 - -1.0
988,842 + CA264_04280 0.33 -1.3
989,090 - -1.5

Or see this region's nucleotide sequence