Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04035

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04025 and CA264_04030 are separated by 120 nucleotidesCA264_04030 and CA264_04035 are separated by 4 nucleotidesCA264_04035 and CA264_04040 are separated by 5 nucleotides CA264_04025: CA264_04025 - hypothetical protein, at 932,931 to 933,611 _04025 CA264_04030: CA264_04030 - multiple antibiotic resistance (MarC)-like protein, at 933,732 to 934,349 _04030 CA264_04035: CA264_04035 - universal stress protein family protein, at 934,354 to 935,229 _04035 CA264_04040: CA264_04040 - choline transporter, at 935,235 to 936,890 _04040 Position (kb) 934 935 936Strain fitness (log2 ratio) -2 -1 0 1 2at 933.367 kb on + strand, within CA264_04025at 933.367 kb on + strand, within CA264_04025at 933.368 kb on - strand, within CA264_04025at 933.411 kb on + strand, within CA264_04025at 933.412 kb on - strand, within CA264_04025at 933.412 kb on - strand, within CA264_04025at 933.461 kb on + strand, within CA264_04025at 933.583 kb on + strandat 933.583 kb on + strandat 933.583 kb on + strandat 933.584 kb on - strandat 933.592 kb on - strandat 933.609 kb on + strandat 933.610 kb on - strandat 933.680 kb on + strandat 933.681 kb on - strandat 933.681 kb on - strandat 933.702 kb on + strandat 933.702 kb on + strandat 933.703 kb on - strandat 933.703 kb on - strandat 933.713 kb on + strandat 933.714 kb on - strandat 933.732 kb on - strandat 933.736 kb on + strandat 933.854 kb on + strand, within CA264_04030at 933.854 kb on + strand, within CA264_04030at 933.855 kb on - strand, within CA264_04030at 933.978 kb on + strand, within CA264_04030at 933.979 kb on - strand, within CA264_04030at 933.982 kb on + strand, within CA264_04030at 933.983 kb on - strand, within CA264_04030at 933.983 kb on - strand, within CA264_04030at 933.986 kb on + strand, within CA264_04030at 933.987 kb on - strand, within CA264_04030at 933.987 kb on - strand, within CA264_04030at 934.064 kb on + strand, within CA264_04030at 934.164 kb on + strand, within CA264_04030at 934.164 kb on + strand, within CA264_04030at 934.164 kb on + strand, within CA264_04030at 934.165 kb on - strand, within CA264_04030at 934.165 kb on - strand, within CA264_04030at 934.165 kb on - strand, within CA264_04030at 934.175 kb on + strand, within CA264_04030at 934.175 kb on + strand, within CA264_04030at 934.277 kb on - strand, within CA264_04030at 934.290 kb on - strandat 934.292 kb on - strandat 934.292 kb on - strandat 934.292 kb on - strandat 934.346 kb on - strandat 934.347 kb on + strandat 934.348 kb on - strandat 934.355 kb on + strandat 934.356 kb on - strandat 934.356 kb on - strandat 934.356 kb on - strandat 934.377 kb on - strandat 934.413 kb on - strandat 934.490 kb on + strand, within CA264_04035at 934.490 kb on + strand, within CA264_04035at 934.490 kb on + strand, within CA264_04035at 934.491 kb on - strand, within CA264_04035at 934.619 kb on - strand, within CA264_04035at 934.619 kb on - strand, within CA264_04035at 934.685 kb on + strand, within CA264_04035at 934.686 kb on - strand, within CA264_04035at 934.922 kb on + strand, within CA264_04035at 934.922 kb on + strand, within CA264_04035at 934.923 kb on - strand, within CA264_04035at 934.978 kb on + strand, within CA264_04035at 934.978 kb on + strand, within CA264_04035at 935.002 kb on - strand, within CA264_04035at 935.020 kb on - strand, within CA264_04035at 935.026 kb on + strand, within CA264_04035at 935.027 kb on - strand, within CA264_04035at 935.089 kb on + strand, within CA264_04035at 935.089 kb on + strand, within CA264_04035at 935.109 kb on + strand, within CA264_04035at 935.110 kb on - strand, within CA264_04035at 935.110 kb on - strand, within CA264_04035at 935.120 kb on + strand, within CA264_04035at 935.120 kb on + strand, within CA264_04035at 935.120 kb on + strand, within CA264_04035at 935.121 kb on - strand, within CA264_04035at 935.121 kb on - strand, within CA264_04035at 935.122 kb on + strand, within CA264_04035at 935.182 kb on + strandat 935.183 kb on - strandat 935.236 kb on + strandat 935.236 kb on + strandat 935.236 kb on + strandat 935.236 kb on + strandat 935.237 kb on - strandat 935.237 kb on - strandat 935.237 kb on - strandat 935.237 kb on - strandat 935.292 kb on + strandat 935.310 kb on + strandat 935.310 kb on + strandat 935.310 kb on + strandat 935.333 kb on - strandat 935.399 kb on - strandat 935.399 kb on - strandat 935.407 kb on + strand, within CA264_04040at 935.408 kb on - strand, within CA264_04040at 935.408 kb on - strand, within CA264_04040at 935.408 kb on - strand, within CA264_04040at 935.450 kb on + strand, within CA264_04040at 935.631 kb on + strand, within CA264_04040at 935.631 kb on + strand, within CA264_04040at 935.634 kb on + strand, within CA264_04040at 935.634 kb on + strand, within CA264_04040at 935.635 kb on - strand, within CA264_04040at 935.635 kb on - strand, within CA264_04040at 935.636 kb on + strand, within CA264_04040at 935.637 kb on - strand, within CA264_04040at 935.637 kb on - strand, within CA264_04040at 935.748 kb on + strand, within CA264_04040at 935.817 kb on + strand, within CA264_04040at 935.826 kb on + strand, within CA264_04040at 935.826 kb on + strand, within CA264_04040at 935.826 kb on + strand, within CA264_04040at 935.827 kb on - strand, within CA264_04040at 935.912 kb on - strand, within CA264_04040at 935.912 kb on - strand, within CA264_04040at 935.950 kb on + strand, within CA264_04040at 935.951 kb on - strand, within CA264_04040at 935.992 kb on + strand, within CA264_04040at 935.993 kb on - strand, within CA264_04040at 935.993 kb on - strand, within CA264_04040at 936.025 kb on - strand, within CA264_04040at 936.080 kb on + strand, within CA264_04040at 936.080 kb on + strand, within CA264_04040at 936.081 kb on - strand, within CA264_04040at 936.081 kb on - strand, within CA264_04040

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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933,367 + CA264_04025 0.64 +0.4
933,367 + CA264_04025 0.64 +0.2
933,368 - CA264_04025 0.64 -0.2
933,411 + CA264_04025 0.70 -0.7
933,412 - CA264_04025 0.71 -1.0
933,412 - CA264_04025 0.71 -0.1
933,461 + CA264_04025 0.78 -0.1
933,583 + -0.1
933,583 + -0.0
933,583 + -1.4
933,584 - -0.4
933,592 - -0.7
933,609 + -1.8
933,610 - +1.3
933,680 + +0.1
933,681 - +0.9
933,681 - +0.6
933,702 + -0.6
933,702 + -0.3
933,703 - -0.0
933,703 - -0.5
933,713 + -0.5
933,714 - -0.2
933,732 - -0.3
933,736 + -0.7
933,854 + CA264_04030 0.20 -0.3
933,854 + CA264_04030 0.20 -0.5
933,855 - CA264_04030 0.20 +0.5
933,978 + CA264_04030 0.40 -0.3
933,979 - CA264_04030 0.40 -0.7
933,982 + CA264_04030 0.40 -0.5
933,983 - CA264_04030 0.41 +1.0
933,983 - CA264_04030 0.41 -0.2
933,986 + CA264_04030 0.41 +0.3
933,987 - CA264_04030 0.41 -1.7
933,987 - CA264_04030 0.41 +0.0
934,064 + CA264_04030 0.54 +1.9
934,164 + CA264_04030 0.70 -0.0
934,164 + CA264_04030 0.70 -0.1
934,164 + CA264_04030 0.70 +0.0
934,165 - CA264_04030 0.70 +0.1
934,165 - CA264_04030 0.70 +0.2
934,165 - CA264_04030 0.70 -0.1
934,175 + CA264_04030 0.72 -0.7
934,175 + CA264_04030 0.72 -0.4
934,277 - CA264_04030 0.88 -0.8
934,290 - +0.6
934,292 - +2.5
934,292 - -0.6
934,292 - -0.0
934,346 - -0.2
934,347 + -2.1
934,348 - -0.7
934,355 + -0.4
934,356 - +0.1
934,356 - -1.0
934,356 - +0.1
934,377 - -0.3
934,413 - +0.1
934,490 + CA264_04035 0.16 -1.4
934,490 + CA264_04035 0.16 -1.3
934,490 + CA264_04035 0.16 -0.3
934,491 - CA264_04035 0.16 -0.5
934,619 - CA264_04035 0.30 -0.4
934,619 - CA264_04035 0.30 +0.3
934,685 + CA264_04035 0.38 +0.3
934,686 - CA264_04035 0.38 -0.0
934,922 + CA264_04035 0.65 -0.5
934,922 + CA264_04035 0.65 -0.2
934,923 - CA264_04035 0.65 -0.3
934,978 + CA264_04035 0.71 +1.6
934,978 + CA264_04035 0.71 -0.2
935,002 - CA264_04035 0.74 +0.3
935,020 - CA264_04035 0.76 -0.0
935,026 + CA264_04035 0.77 -0.1
935,027 - CA264_04035 0.77 +0.4
935,089 + CA264_04035 0.84 -0.0
935,089 + CA264_04035 0.84 -0.1
935,109 + CA264_04035 0.86 -0.2
935,110 - CA264_04035 0.86 -1.2
935,110 - CA264_04035 0.86 +0.0
935,120 + CA264_04035 0.87 -0.4
935,120 + CA264_04035 0.87 -0.5
935,120 + CA264_04035 0.87 -0.1
935,121 - CA264_04035 0.88 +0.0
935,121 - CA264_04035 0.88 -1.0
935,122 + CA264_04035 0.88 +0.1
935,182 + -0.1
935,183 - -1.0
935,236 + +0.5
935,236 + +0.5
935,236 + -0.5
935,236 + -0.2
935,237 - +0.5
935,237 - +0.2
935,237 - -0.1
935,237 - +0.7
935,292 + -1.5
935,310 + -0.6
935,310 + -1.2
935,310 + -0.3
935,333 - -0.3
935,399 - -1.0
935,399 - +0.2
935,407 + CA264_04040 0.10 +0.2
935,408 - CA264_04040 0.10 +0.2
935,408 - CA264_04040 0.10 +1.5
935,408 - CA264_04040 0.10 -0.1
935,450 + CA264_04040 0.13 -0.5
935,631 + CA264_04040 0.24 +0.0
935,631 + CA264_04040 0.24 -0.5
935,634 + CA264_04040 0.24 +0.9
935,634 + CA264_04040 0.24 +0.2
935,635 - CA264_04040 0.24 -0.1
935,635 - CA264_04040 0.24 +0.4
935,636 + CA264_04040 0.24 -0.4
935,637 - CA264_04040 0.24 -0.1
935,637 - CA264_04040 0.24 -0.3
935,748 + CA264_04040 0.31 -1.0
935,817 + CA264_04040 0.35 +0.1
935,826 + CA264_04040 0.36 +0.6
935,826 + CA264_04040 0.36 -0.1
935,826 + CA264_04040 0.36 -0.4
935,827 - CA264_04040 0.36 +0.6
935,912 - CA264_04040 0.41 -0.7
935,912 - CA264_04040 0.41 -1.6
935,950 + CA264_04040 0.43 +0.1
935,951 - CA264_04040 0.43 -0.3
935,992 + CA264_04040 0.46 -0.3
935,993 - CA264_04040 0.46 -0.2
935,993 - CA264_04040 0.46 -0.1
936,025 - CA264_04040 0.48 +0.2
936,080 + CA264_04040 0.51 +0.5
936,080 + CA264_04040 0.51 +0.4
936,081 - CA264_04040 0.51 -0.1
936,081 - CA264_04040 0.51 +0.2

Or see this region's nucleotide sequence