Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02970 and CA264_02975 are separated by 57 nucleotides CA264_02975 and CA264_02980 are separated by 12 nucleotides CA264_02980 and CA264_02985 are separated by 44 nucleotides
CA264_02970: CA264_02970 - glucose-1-phosphate cytidylyltransferase, at 681,862 to 682,665
_02970
CA264_02975: CA264_02975 - NAD-dependent epimerase, at 682,723 to 683,808
_02975
CA264_02980: CA264_02980 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 683,821 to 684,384
_02980
CA264_02985: CA264_02985 - NAD(P)-dependent oxidoreductase, at 684,429 to 685,790
_02985
Position (kb) 682
683
684 Strain fitness (log2 ratio) -1
0
1
2 at 681.746 kb on + strand at 681.846 kb on + strand at 681.854 kb on + strand at 681.858 kb on - strand at 681.859 kb on + strand at 681.860 kb on - strand at 681.874 kb on - strand at 681.875 kb on + strand at 681.875 kb on + strand at 681.875 kb on + strand at 681.980 kb on + strand, within CA264_02970 at 681.980 kb on + strand, within CA264_02970 at 681.981 kb on - strand, within CA264_02970 at 681.983 kb on - strand, within CA264_02970 at 681.983 kb on - strand, within CA264_02970 at 681.992 kb on - strand, within CA264_02970 at 681.992 kb on - strand, within CA264_02970 at 682.070 kb on - strand, within CA264_02970 at 682.221 kb on + strand, within CA264_02970 at 682.462 kb on + strand, within CA264_02970 at 682.463 kb on - strand, within CA264_02970 at 682.664 kb on - strand at 682.664 kb on - strand at 682.703 kb on + strand at 682.703 kb on + strand at 682.706 kb on + strand at 682.706 kb on + strand at 682.707 kb on - strand at 682.708 kb on + strand at 682.708 kb on + strand at 682.708 kb on + strand at 682.710 kb on + strand at 682.711 kb on - strand at 682.711 kb on - strand at 682.711 kb on - strand at 682.811 kb on + strand at 682.811 kb on + strand at 682.812 kb on - strand at 683.009 kb on + strand, within CA264_02975 at 683.014 kb on + strand, within CA264_02975 at 683.015 kb on - strand, within CA264_02975 at 683.015 kb on - strand, within CA264_02975 at 683.017 kb on - strand, within CA264_02975 at 683.047 kb on - strand, within CA264_02975 at 683.095 kb on + strand, within CA264_02975 at 683.095 kb on + strand, within CA264_02975 at 683.096 kb on - strand, within CA264_02975 at 683.096 kb on - strand, within CA264_02975 at 683.096 kb on - strand, within CA264_02975 at 683.096 kb on - strand, within CA264_02975 at 683.367 kb on - strand, within CA264_02975 at 683.400 kb on + strand, within CA264_02975 at 683.401 kb on - strand, within CA264_02975 at 683.501 kb on + strand, within CA264_02975 at 683.502 kb on - strand, within CA264_02975 at 683.557 kb on + strand, within CA264_02975 at 683.557 kb on + strand, within CA264_02975 at 683.558 kb on - strand, within CA264_02975 at 683.565 kb on - strand, within CA264_02975 at 683.580 kb on + strand, within CA264_02975 at 683.612 kb on - strand, within CA264_02975 at 683.686 kb on - strand, within CA264_02975 at 683.686 kb on - strand, within CA264_02975 at 683.736 kb on + strand at 683.736 kb on + strand at 683.736 kb on + strand at 683.737 kb on - strand at 683.807 kb on - strand at 683.811 kb on - strand at 683.812 kb on + strand at 683.868 kb on - strand at 683.967 kb on - strand, within CA264_02980 at 683.972 kb on - strand, within CA264_02980 at 683.972 kb on - strand, within CA264_02980 at 683.972 kb on - strand, within CA264_02980 at 683.972 kb on - strand, within CA264_02980 at 684.064 kb on + strand, within CA264_02980 at 684.064 kb on + strand, within CA264_02980 at 684.065 kb on - strand, within CA264_02980 at 684.138 kb on + strand, within CA264_02980 at 684.139 kb on - strand, within CA264_02980 at 684.215 kb on - strand, within CA264_02980 at 684.215 kb on - strand, within CA264_02980 at 684.232 kb on + strand, within CA264_02980 at 684.233 kb on - strand, within CA264_02980 at 684.419 kb on - strand at 684.421 kb on - strand at 684.434 kb on - strand at 684.436 kb on + strand at 684.474 kb on - strand at 684.539 kb on + strand at 684.539 kb on + strand at 684.540 kb on - strand at 684.544 kb on - strand at 684.544 kb on - strand at 684.607 kb on - strand, within CA264_02985 at 684.681 kb on - strand, within CA264_02985 at 684.749 kb on + strand, within CA264_02985 at 684.778 kb on + strand, within CA264_02985
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 681,746 + +0.5 681,846 + +0.9 681,854 + +0.1 681,858 - -0.0 681,859 + +0.1 681,860 - +0.0 681,874 - +1.3 681,875 + -1.0 681,875 + -0.1 681,875 + -0.4 681,980 + CA264_02970 0.15 +1.0 681,980 + CA264_02970 0.15 +0.2 681,981 - CA264_02970 0.15 -0.4 681,983 - CA264_02970 0.15 -0.3 681,983 - CA264_02970 0.15 -0.3 681,992 - CA264_02970 0.16 -1.1 681,992 - CA264_02970 0.16 -0.0 682,070 - CA264_02970 0.26 -0.2 682,221 + CA264_02970 0.45 -0.0 682,462 + CA264_02970 0.75 +0.5 682,463 - CA264_02970 0.75 +0.0 682,664 - +1.2 682,664 - +0.5 682,703 + +0.9 682,703 + +1.5 682,706 + -0.1 682,706 + +0.9 682,707 - +0.5 682,708 + +0.5 682,708 + +0.0 682,708 + -0.5 682,710 + +0.4 682,711 - -0.8 682,711 - -0.9 682,711 - -0.7 682,811 + +0.9 682,811 + +0.6 682,812 - -1.2 683,009 + CA264_02975 0.26 +0.9 683,014 + CA264_02975 0.27 -0.7 683,015 - CA264_02975 0.27 -0.2 683,015 - CA264_02975 0.27 -0.1 683,017 - CA264_02975 0.27 +0.1 683,047 - CA264_02975 0.30 +0.8 683,095 + CA264_02975 0.34 +0.9 683,095 + CA264_02975 0.34 +0.9 683,096 - CA264_02975 0.34 -0.5 683,096 - CA264_02975 0.34 -0.1 683,096 - CA264_02975 0.34 -0.1 683,096 - CA264_02975 0.34 +0.3 683,367 - CA264_02975 0.59 +0.2 683,400 + CA264_02975 0.62 +0.6 683,401 - CA264_02975 0.62 -0.5 683,501 + CA264_02975 0.72 -0.7 683,502 - CA264_02975 0.72 -0.2 683,557 + CA264_02975 0.77 +0.5 683,557 + CA264_02975 0.77 +0.1 683,558 - CA264_02975 0.77 +0.4 683,565 - CA264_02975 0.78 -1.2 683,580 + CA264_02975 0.79 +0.2 683,612 - CA264_02975 0.82 -0.8 683,686 - CA264_02975 0.89 +0.6 683,686 - CA264_02975 0.89 +0.7 683,736 + +0.7 683,736 + +1.6 683,736 + +0.1 683,737 - +2.3 683,807 - +0.3 683,811 - +0.9 683,812 + +0.5 683,868 - -0.2 683,967 - CA264_02980 0.26 -0.4 683,972 - CA264_02980 0.27 -0.3 683,972 - CA264_02980 0.27 +0.2 683,972 - CA264_02980 0.27 +0.2 683,972 - CA264_02980 0.27 +0.2 684,064 + CA264_02980 0.43 -0.1 684,064 + CA264_02980 0.43 +0.4 684,065 - CA264_02980 0.43 +0.5 684,138 + CA264_02980 0.56 +0.3 684,139 - CA264_02980 0.56 +0.7 684,215 - CA264_02980 0.70 +0.7 684,215 - CA264_02980 0.70 +0.3 684,232 + CA264_02980 0.73 +1.0 684,233 - CA264_02980 0.73 -0.3 684,419 - -0.2 684,421 - -0.0 684,434 - -0.8 684,436 + +1.3 684,474 - -0.7 684,539 + -0.9 684,539 + +1.4 684,540 - -1.6 684,544 - -0.0 684,544 - -1.5 684,607 - CA264_02985 0.13 +0.4 684,681 - CA264_02985 0.19 -1.3 684,749 + CA264_02985 0.23 +0.3 684,778 + CA264_02985 0.26 +1.0
Or see this region's nucleotide sequence