Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02670 and CA264_02675 are separated by 586 nucleotides CA264_02675 and CA264_02680 are separated by 190 nucleotides CA264_02680 and CA264_02685 overlap by 11 nucleotides
CA264_02670: CA264_02670 - hypothetical protein, at 617,509 to 618,273
_02670
CA264_02675: CA264_02675 - succinate-semialdehyde dehydrogenase, at 618,860 to 620,224
_02675
CA264_02680: CA264_02680 - RNA polymerase subunit sigma-70, at 620,415 to 620,972
_02680
CA264_02685: CA264_02685 - hypothetical protein, at 620,962 to 621,777
_02685
Position (kb) 618
619
620
621 Strain fitness (log2 ratio) -2
-1
0
1 at 617.965 kb on - strand, within CA264_02670 at 618.130 kb on + strand, within CA264_02670 at 618.250 kb on + strand at 618.250 kb on + strand at 618.251 kb on - strand at 618.361 kb on + strand at 618.361 kb on + strand at 618.362 kb on - strand at 618.397 kb on - strand at 618.400 kb on - strand at 618.400 kb on - strand at 618.402 kb on - strand at 618.532 kb on - strand at 618.558 kb on + strand at 618.561 kb on - strand at 618.570 kb on + strand at 618.571 kb on - strand at 618.575 kb on - strand at 618.575 kb on - strand at 618.646 kb on - strand at 618.646 kb on - strand at 618.646 kb on - strand at 618.648 kb on + strand at 618.649 kb on - strand at 618.654 kb on + strand at 618.656 kb on + strand at 618.656 kb on + strand at 618.763 kb on - strand at 618.763 kb on - strand at 618.769 kb on + strand at 618.769 kb on + strand at 618.788 kb on - strand at 618.816 kb on - strand at 618.849 kb on - strand at 618.851 kb on + strand at 618.851 kb on + strand at 618.851 kb on + strand at 618.852 kb on - strand at 618.857 kb on - strand at 618.857 kb on - strand at 618.857 kb on - strand at 618.857 kb on - strand at 618.861 kb on + strand at 618.861 kb on + strand at 618.861 kb on + strand at 618.910 kb on - strand at 619.116 kb on - strand, within CA264_02675 at 619.116 kb on - strand, within CA264_02675 at 619.159 kb on - strand, within CA264_02675 at 619.206 kb on + strand, within CA264_02675 at 619.206 kb on + strand, within CA264_02675 at 619.207 kb on - strand, within CA264_02675 at 619.520 kb on - strand, within CA264_02675 at 619.775 kb on + strand, within CA264_02675 at 619.775 kb on + strand, within CA264_02675 at 619.776 kb on - strand, within CA264_02675 at 619.776 kb on - strand, within CA264_02675 at 619.854 kb on - strand, within CA264_02675 at 619.945 kb on - strand, within CA264_02675 at 620.074 kb on + strand, within CA264_02675 at 620.074 kb on + strand, within CA264_02675 at 620.075 kb on - strand, within CA264_02675 at 620.151 kb on - strand at 620.173 kb on + strand at 620.216 kb on + strand at 620.248 kb on + strand at 620.249 kb on - strand at 620.249 kb on - strand at 620.249 kb on - strand at 620.249 kb on - strand at 620.249 kb on - strand at 620.252 kb on + strand at 620.268 kb on + strand at 620.268 kb on + strand at 620.270 kb on + strand at 620.271 kb on - strand at 620.339 kb on - strand at 620.346 kb on + strand at 620.347 kb on - strand at 620.353 kb on - strand at 620.353 kb on - strand at 620.359 kb on + strand at 620.360 kb on - strand at 620.511 kb on + strand, within CA264_02680 at 620.667 kb on - strand, within CA264_02680 at 620.765 kb on + strand, within CA264_02680 at 620.847 kb on + strand, within CA264_02680 at 620.886 kb on + strand, within CA264_02680 at 620.933 kb on + strand at 620.934 kb on - strand at 620.980 kb on + strand at 620.980 kb on + strand at 620.984 kb on + strand at 621.169 kb on - strand, within CA264_02685 at 621.180 kb on - strand, within CA264_02685
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 617,965 - CA264_02670 0.60 -0.2 618,130 + CA264_02670 0.81 -0.7 618,250 + +0.3 618,250 + -1.3 618,251 - +0.1 618,361 + -1.8 618,361 + -0.6 618,362 - -0.9 618,397 - +1.0 618,400 - -0.6 618,400 - -0.3 618,402 - -0.5 618,532 - -0.3 618,558 + -0.2 618,561 - +0.4 618,570 + -0.2 618,571 - -0.5 618,575 - -2.5 618,575 - -0.8 618,646 - +0.3 618,646 - +0.1 618,646 - -0.0 618,648 + -0.5 618,649 - -0.5 618,654 + +0.8 618,656 + +1.4 618,656 + +1.4 618,763 - -0.7 618,763 - +0.1 618,769 + +0.0 618,769 + -0.1 618,788 - -0.5 618,816 - +0.3 618,849 - +0.2 618,851 + -1.3 618,851 + -0.6 618,851 + -0.5 618,852 - +0.1 618,857 - -0.4 618,857 - +0.0 618,857 - +0.0 618,857 - -0.9 618,861 + -1.1 618,861 + +0.1 618,861 + -0.9 618,910 - +0.3 619,116 - CA264_02675 0.19 +1.1 619,116 - CA264_02675 0.19 +0.1 619,159 - CA264_02675 0.22 -0.3 619,206 + CA264_02675 0.25 -0.3 619,206 + CA264_02675 0.25 -1.7 619,207 - CA264_02675 0.25 -1.7 619,520 - CA264_02675 0.48 +0.5 619,775 + CA264_02675 0.67 -0.2 619,775 + CA264_02675 0.67 -0.4 619,776 - CA264_02675 0.67 -0.1 619,776 - CA264_02675 0.67 +0.1 619,854 - CA264_02675 0.73 +1.0 619,945 - CA264_02675 0.79 +0.8 620,074 + CA264_02675 0.89 -0.7 620,074 + CA264_02675 0.89 -0.6 620,075 - CA264_02675 0.89 +0.0 620,151 - +0.4 620,173 + +0.5 620,216 + -1.7 620,248 + -0.7 620,249 - +0.5 620,249 - +0.1 620,249 - +0.7 620,249 - -0.0 620,249 - +1.3 620,252 + -0.5 620,268 + -0.1 620,268 + -0.3 620,270 + -0.1 620,271 - -0.6 620,339 - -0.7 620,346 + -2.3 620,347 - -0.7 620,353 - -0.9 620,353 - +0.3 620,359 + +0.5 620,360 - -0.8 620,511 + CA264_02680 0.17 +0.0 620,667 - CA264_02680 0.45 +0.1 620,765 + CA264_02680 0.63 -1.6 620,847 + CA264_02680 0.77 -0.3 620,886 + CA264_02680 0.84 -1.3 620,933 + +0.0 620,934 - +1.0 620,980 + +0.9 620,980 + +0.3 620,984 + +0.3 621,169 - CA264_02685 0.25 +0.5 621,180 - CA264_02685 0.27 -1.2
Or see this region's nucleotide sequence