Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01840

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01830 and CA264_01835 are separated by 126 nucleotidesCA264_01835 and CA264_01840 are separated by 240 nucleotidesCA264_01840 and CA264_01845 are separated by 106 nucleotides CA264_01830: CA264_01830 - Bcr/CflA family drug resistance efflux transporter, at 428,596 to 429,846 _01830 CA264_01835: CA264_01835 - GNAT family N-acetyltransferase, at 429,973 to 430,422 _01835 CA264_01840: CA264_01840 - pyridine nucleotide-disulfide oxidoreductase, at 430,663 to 431,721 _01840 CA264_01845: CA264_01845 - aldo/keto reductase, at 431,828 to 432,799 _01845 Position (kb) 430 431 432Strain fitness (log2 ratio) -2 -1 0 1 2at 429.696 kb on + strand, within CA264_01830at 429.697 kb on - strand, within CA264_01830at 429.712 kb on - strand, within CA264_01830at 429.735 kb on + strandat 429.811 kb on - strandat 429.825 kb on - strandat 429.844 kb on + strandat 429.845 kb on - strandat 429.876 kb on - strandat 429.992 kb on - strandat 430.034 kb on - strand, within CA264_01835at 430.211 kb on + strand, within CA264_01835at 430.265 kb on + strand, within CA264_01835at 430.266 kb on - strand, within CA264_01835at 430.267 kb on + strand, within CA264_01835at 430.267 kb on + strand, within CA264_01835at 430.383 kb on + strandat 430.493 kb on - strandat 430.523 kb on + strandat 430.567 kb on - strandat 430.632 kb on + strandat 430.632 kb on + strandat 430.633 kb on - strandat 430.664 kb on + strandat 430.675 kb on + strandat 430.675 kb on + strandat 430.675 kb on + strandat 430.676 kb on - strandat 430.734 kb on + strandat 430.769 kb on - strand, within CA264_01840at 430.881 kb on + strand, within CA264_01840at 430.943 kb on + strand, within CA264_01840at 430.943 kb on + strand, within CA264_01840at 430.944 kb on - strand, within CA264_01840at 431.019 kb on + strand, within CA264_01840at 431.020 kb on - strand, within CA264_01840at 431.033 kb on + strand, within CA264_01840at 431.034 kb on - strand, within CA264_01840at 431.034 kb on - strand, within CA264_01840at 431.047 kb on + strand, within CA264_01840at 431.072 kb on + strand, within CA264_01840at 431.075 kb on + strand, within CA264_01840at 431.076 kb on - strand, within CA264_01840at 431.089 kb on + strand, within CA264_01840at 431.099 kb on - strand, within CA264_01840at 431.149 kb on + strand, within CA264_01840at 431.150 kb on - strand, within CA264_01840at 431.215 kb on + strand, within CA264_01840at 431.216 kb on - strand, within CA264_01840at 431.219 kb on - strand, within CA264_01840at 431.259 kb on - strand, within CA264_01840at 431.289 kb on - strand, within CA264_01840at 431.307 kb on - strand, within CA264_01840at 431.318 kb on + strand, within CA264_01840at 431.319 kb on - strand, within CA264_01840at 431.329 kb on + strand, within CA264_01840at 431.329 kb on + strand, within CA264_01840at 431.330 kb on - strand, within CA264_01840at 431.363 kb on + strand, within CA264_01840at 431.363 kb on + strand, within CA264_01840at 431.364 kb on - strand, within CA264_01840at 431.366 kb on + strand, within CA264_01840at 431.366 kb on + strand, within CA264_01840at 431.367 kb on - strand, within CA264_01840at 431.428 kb on + strand, within CA264_01840at 431.504 kb on + strand, within CA264_01840at 431.658 kb on - strandat 431.735 kb on + strandat 431.736 kb on - strandat 431.781 kb on - strandat 431.821 kb on + strandat 431.829 kb on + strandat 431.829 kb on + strandat 431.830 kb on - strandat 431.873 kb on + strandat 431.874 kb on - strandat 432.093 kb on + strand, within CA264_01845at 432.094 kb on - strand, within CA264_01845at 432.181 kb on + strand, within CA264_01845at 432.181 kb on + strand, within CA264_01845at 432.182 kb on - strand, within CA264_01845at 432.249 kb on + strand, within CA264_01845at 432.347 kb on - strand, within CA264_01845at 432.510 kb on - strand, within CA264_01845at 432.514 kb on + strand, within CA264_01845at 432.514 kb on + strand, within CA264_01845at 432.539 kb on - strand, within CA264_01845at 432.570 kb on + strand, within CA264_01845at 432.571 kb on - strand, within CA264_01845at 432.674 kb on + strand, within CA264_01845at 432.680 kb on + strand, within CA264_01845

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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429,696 + CA264_01830 0.88 -1.1
429,697 - CA264_01830 0.88 -0.2
429,712 - CA264_01830 0.89 -0.9
429,735 + +0.6
429,811 - +0.0
429,825 - -0.4
429,844 + +0.3
429,845 - -0.1
429,876 - -0.4
429,992 - +0.4
430,034 - CA264_01835 0.14 +0.1
430,211 + CA264_01835 0.53 -0.3
430,265 + CA264_01835 0.65 -0.9
430,266 - CA264_01835 0.65 +1.8
430,267 + CA264_01835 0.65 -0.1
430,267 + CA264_01835 0.65 -0.4
430,383 + +0.0
430,493 - -0.3
430,523 + -0.6
430,567 - +1.3
430,632 + -0.1
430,632 + -0.2
430,633 - -0.4
430,664 + +0.6
430,675 + -1.2
430,675 + -0.1
430,675 + -0.7
430,676 - -0.2
430,734 + -0.3
430,769 - CA264_01840 0.10 +0.5
430,881 + CA264_01840 0.21 -1.3
430,943 + CA264_01840 0.26 -0.7
430,943 + CA264_01840 0.26 +0.8
430,944 - CA264_01840 0.27 +1.3
431,019 + CA264_01840 0.34 -0.1
431,020 - CA264_01840 0.34 -0.3
431,033 + CA264_01840 0.35 -0.5
431,034 - CA264_01840 0.35 +0.1
431,034 - CA264_01840 0.35 +0.1
431,047 + CA264_01840 0.36 +0.4
431,072 + CA264_01840 0.39 +0.1
431,075 + CA264_01840 0.39 +0.0
431,076 - CA264_01840 0.39 -0.8
431,089 + CA264_01840 0.40 +0.0
431,099 - CA264_01840 0.41 -0.0
431,149 + CA264_01840 0.46 +0.8
431,150 - CA264_01840 0.46 +1.4
431,215 + CA264_01840 0.52 -0.2
431,216 - CA264_01840 0.52 +0.8
431,219 - CA264_01840 0.53 +0.3
431,259 - CA264_01840 0.56 -0.1
431,289 - CA264_01840 0.59 -0.0
431,307 - CA264_01840 0.61 -0.1
431,318 + CA264_01840 0.62 -0.8
431,319 - CA264_01840 0.62 +0.3
431,329 + CA264_01840 0.63 +0.1
431,329 + CA264_01840 0.63 +0.0
431,330 - CA264_01840 0.63 +0.3
431,363 + CA264_01840 0.66 +0.5
431,363 + CA264_01840 0.66 -0.2
431,364 - CA264_01840 0.66 -0.5
431,366 + CA264_01840 0.66 +0.1
431,366 + CA264_01840 0.66 -0.1
431,367 - CA264_01840 0.66 +2.0
431,428 + CA264_01840 0.72 +0.2
431,504 + CA264_01840 0.79 +0.4
431,658 - +0.3
431,735 + +1.8
431,736 - +0.6
431,781 - +0.5
431,821 + +0.2
431,829 + -0.0
431,829 + -0.5
431,830 - +2.0
431,873 + -0.2
431,874 - +0.4
432,093 + CA264_01845 0.27 +1.1
432,094 - CA264_01845 0.27 +0.7
432,181 + CA264_01845 0.36 +0.2
432,181 + CA264_01845 0.36 -1.1
432,182 - CA264_01845 0.36 -0.1
432,249 + CA264_01845 0.43 -0.2
432,347 - CA264_01845 0.53 +0.4
432,510 - CA264_01845 0.70 +0.3
432,514 + CA264_01845 0.71 -1.8
432,514 + CA264_01845 0.71 -0.6
432,539 - CA264_01845 0.73 -1.0
432,570 + CA264_01845 0.76 +0.0
432,571 - CA264_01845 0.76 +0.4
432,674 + CA264_01845 0.87 -0.2
432,680 + CA264_01845 0.88 +0.5

Or see this region's nucleotide sequence