Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01765

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01760 and CA264_01765 are separated by 308 nucleotidesCA264_01765 and CA264_01770 are separated by 115 nucleotides CA264_01760: CA264_01760 - amidohydrolase, at 415,845 to 417,185 _01760 CA264_01765: CA264_01765 - hypothetical protein, at 417,494 to 418,564 _01765 CA264_01770: CA264_01770 - peptidase, at 418,680 to 420,479 _01770 Position (kb) 417 418 419Strain fitness (log2 ratio) -2 -1 0 1 2at 416.552 kb on + strand, within CA264_01760at 416.585 kb on - strand, within CA264_01760at 416.586 kb on + strand, within CA264_01760at 416.601 kb on + strand, within CA264_01760at 416.602 kb on - strand, within CA264_01760at 416.602 kb on - strand, within CA264_01760at 416.617 kb on + strand, within CA264_01760at 416.715 kb on - strand, within CA264_01760at 416.741 kb on - strand, within CA264_01760at 416.848 kb on + strand, within CA264_01760at 416.874 kb on - strand, within CA264_01760at 416.896 kb on - strand, within CA264_01760at 416.903 kb on - strand, within CA264_01760at 416.959 kb on + strand, within CA264_01760at 416.959 kb on + strand, within CA264_01760at 416.959 kb on + strandat 416.959 kb on + strand, within CA264_01760at 416.980 kb on + strand, within CA264_01760at 416.980 kb on + strand, within CA264_01760at 417.050 kb on - strand, within CA264_01760at 417.060 kb on + strandat 417.061 kb on - strandat 417.064 kb on + strandat 417.108 kb on + strandat 417.129 kb on + strandat 417.130 kb on - strandat 417.131 kb on + strandat 417.132 kb on - strandat 417.132 kb on - strandat 417.165 kb on - strandat 417.165 kb on - strandat 417.194 kb on + strandat 417.195 kb on - strandat 417.202 kb on - strandat 417.263 kb on + strandat 417.267 kb on + strandat 417.267 kb on + strandat 417.267 kb on + strandat 417.269 kb on + strandat 417.269 kb on + strandat 417.269 kb on + strandat 417.269 kb on + strandat 417.269 kb on + strandat 417.270 kb on - strandat 417.270 kb on - strandat 417.313 kb on + strandat 417.314 kb on - strandat 417.326 kb on - strandat 417.326 kb on - strandat 417.326 kb on - strandat 417.332 kb on - strandat 417.332 kb on - strandat 417.332 kb on - strandat 417.332 kb on - strandat 417.332 kb on - strandat 417.332 kb on - strandat 417.332 kb on - strandat 417.332 kb on - strandat 417.336 kb on - strandat 417.338 kb on - strandat 417.353 kb on - strandat 417.399 kb on + strandat 417.399 kb on + strandat 417.399 kb on + strandat 417.399 kb on + strandat 417.403 kb on + strandat 417.461 kb on - strandat 417.478 kb on + strandat 417.478 kb on + strandat 417.478 kb on + strandat 417.479 kb on - strandat 417.479 kb on - strandat 417.479 kb on - strandat 417.479 kb on - strandat 417.481 kb on - strandat 417.481 kb on - strandat 417.481 kb on - strandat 417.483 kb on + strandat 417.612 kb on - strand, within CA264_01765at 417.714 kb on - strand, within CA264_01765at 417.749 kb on + strand, within CA264_01765at 417.749 kb on + strand, within CA264_01765at 417.749 kb on + strand, within CA264_01765at 417.767 kb on + strand, within CA264_01765at 417.793 kb on + strand, within CA264_01765at 417.822 kb on - strand, within CA264_01765at 417.871 kb on - strand, within CA264_01765at 417.898 kb on + strand, within CA264_01765at 417.923 kb on - strand, within CA264_01765at 417.975 kb on - strand, within CA264_01765at 418.002 kb on + strand, within CA264_01765at 418.003 kb on - strand, within CA264_01765at 418.003 kb on - strand, within CA264_01765at 418.021 kb on + strand, within CA264_01765at 418.028 kb on - strand, within CA264_01765at 418.058 kb on + strand, within CA264_01765at 418.196 kb on - strand, within CA264_01765at 418.243 kb on + strand, within CA264_01765at 418.243 kb on + strand, within CA264_01765at 418.249 kb on + strand, within CA264_01765at 418.250 kb on - strand, within CA264_01765at 418.335 kb on + strand, within CA264_01765at 418.336 kb on - strand, within CA264_01765at 418.339 kb on + strand, within CA264_01765at 418.339 kb on + strand, within CA264_01765at 418.339 kb on + strand, within CA264_01765at 418.339 kb on + strand, within CA264_01765at 418.340 kb on - strand, within CA264_01765at 418.445 kb on - strand, within CA264_01765at 418.480 kb on + strandat 418.486 kb on - strandat 418.532 kb on + strandat 418.543 kb on + strandat 418.544 kb on - strandat 418.544 kb on - strandat 418.547 kb on - strandat 418.580 kb on - strandat 418.592 kb on - strandat 418.659 kb on - strandat 418.681 kb on + strandat 418.829 kb on + strandat 418.830 kb on - strandat 418.830 kb on - strandat 418.830 kb on - strandat 418.888 kb on - strand, within CA264_01770at 418.914 kb on + strand, within CA264_01770at 418.915 kb on - strand, within CA264_01770at 418.963 kb on - strand, within CA264_01770at 419.050 kb on + strand, within CA264_01770at 419.105 kb on + strand, within CA264_01770at 419.110 kb on + strand, within CA264_01770at 419.111 kb on - strand, within CA264_01770at 419.131 kb on - strand, within CA264_01770at 419.158 kb on - strand, within CA264_01770at 419.200 kb on + strand, within CA264_01770at 419.208 kb on - strand, within CA264_01770at 419.223 kb on + strand, within CA264_01770at 419.259 kb on + strand, within CA264_01770at 419.259 kb on + strand, within CA264_01770at 419.260 kb on - strand, within CA264_01770at 419.270 kb on + strand, within CA264_01770at 419.274 kb on + strand, within CA264_01770at 419.274 kb on + strand, within CA264_01770at 419.287 kb on - strand, within CA264_01770at 419.289 kb on + strand, within CA264_01770at 419.290 kb on - strand, within CA264_01770at 419.305 kb on + strand, within CA264_01770at 419.341 kb on + strand, within CA264_01770at 419.342 kb on - strand, within CA264_01770at 419.348 kb on + strand, within CA264_01770at 419.372 kb on - strand, within CA264_01770at 419.426 kb on - strand, within CA264_01770at 419.432 kb on + strand, within CA264_01770at 419.454 kb on + strand, within CA264_01770at 419.454 kb on + strand, within CA264_01770at 419.455 kb on - strand, within CA264_01770at 419.494 kb on + strand, within CA264_01770at 419.497 kb on - strand, within CA264_01770

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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416,552 + CA264_01760 0.53 -0.5
416,585 - CA264_01760 0.55 -0.8
416,586 + CA264_01760 0.55 +0.1
416,601 + CA264_01760 0.56 +0.4
416,602 - CA264_01760 0.56 -0.6
416,602 - CA264_01760 0.56 -0.8
416,617 + CA264_01760 0.58 +0.1
416,715 - CA264_01760 0.65 -0.2
416,741 - CA264_01760 0.67 -0.3
416,848 + CA264_01760 0.75 +0.1
416,874 - CA264_01760 0.77 -0.9
416,896 - CA264_01760 0.78 -1.1
416,903 - CA264_01760 0.79 -0.4
416,959 + CA264_01760 0.83 +0.5
416,959 + CA264_01760 0.83 +0.7
416,959 + +1.8
416,959 + CA264_01760 0.83 +0.7
416,980 + CA264_01760 0.85 +0.7
416,980 + CA264_01760 0.85 +0.8
417,050 - CA264_01760 0.90 +0.2
417,060 + +0.7
417,061 - +0.7
417,064 + +0.4
417,108 + +1.0
417,129 + -0.4
417,130 - +0.7
417,131 + -0.0
417,132 - -1.1
417,132 - -0.7
417,165 - -0.3
417,165 - -1.3
417,194 + +0.9
417,195 - -0.8
417,202 - -0.2
417,263 + -0.0
417,267 + -0.6
417,267 + -0.6
417,267 + -0.7
417,269 + -1.5
417,269 + -0.4
417,269 + -1.1
417,269 + -0.5
417,269 + -0.6
417,270 - +0.1
417,270 - -0.1
417,313 + +0.2
417,314 - +0.8
417,326 - +1.9
417,326 - +0.2
417,326 - +1.4
417,332 - +0.7
417,332 - +1.2
417,332 - -0.4
417,332 - +0.1
417,332 - +0.0
417,332 - +0.3
417,332 - +0.3
417,332 - +0.8
417,336 - +0.5
417,338 - -0.8
417,353 - +0.4
417,399 + -1.6
417,399 + -0.5
417,399 + -0.9
417,399 + -0.8
417,403 + +0.8
417,461 - +1.1
417,478 + -0.7
417,478 + -0.9
417,478 + -1.6
417,479 - +0.0
417,479 - +0.3
417,479 - -0.2
417,479 - -0.1
417,481 - +0.2
417,481 - +0.2
417,481 - +2.2
417,483 + -0.5
417,612 - CA264_01765 0.11 +0.5
417,714 - CA264_01765 0.21 +0.4
417,749 + CA264_01765 0.24 -1.1
417,749 + CA264_01765 0.24 -0.9
417,749 + CA264_01765 0.24 +0.4
417,767 + CA264_01765 0.25 -1.1
417,793 + CA264_01765 0.28 -0.7
417,822 - CA264_01765 0.31 +0.8
417,871 - CA264_01765 0.35 +0.0
417,898 + CA264_01765 0.38 -0.6
417,923 - CA264_01765 0.40 +0.5
417,975 - CA264_01765 0.45 -0.5
418,002 + CA264_01765 0.47 -0.4
418,003 - CA264_01765 0.48 -0.1
418,003 - CA264_01765 0.48 +0.1
418,021 + CA264_01765 0.49 -2.4
418,028 - CA264_01765 0.50 -0.0
418,058 + CA264_01765 0.53 -1.3
418,196 - CA264_01765 0.66 +1.2
418,243 + CA264_01765 0.70 +0.1
418,243 + CA264_01765 0.70 +1.0
418,249 + CA264_01765 0.70 -1.5
418,250 - CA264_01765 0.71 -0.5
418,335 + CA264_01765 0.79 -0.3
418,336 - CA264_01765 0.79 -1.2
418,339 + CA264_01765 0.79 -0.4
418,339 + CA264_01765 0.79 -0.4
418,339 + CA264_01765 0.79 -0.8
418,339 + CA264_01765 0.79 -0.4
418,340 - CA264_01765 0.79 -0.5
418,445 - CA264_01765 0.89 +0.8
418,480 + -0.9
418,486 - +1.2
418,532 + -1.1
418,543 + -0.5
418,544 - +0.1
418,544 - -0.2
418,547 - -0.1
418,580 - +0.5
418,592 - +0.1
418,659 - +0.1
418,681 + -0.9
418,829 + +0.3
418,830 - +0.5
418,830 - +0.6
418,830 - +1.4
418,888 - CA264_01770 0.12 +0.7
418,914 + CA264_01770 0.13 -0.5
418,915 - CA264_01770 0.13 +1.1
418,963 - CA264_01770 0.16 +0.7
419,050 + CA264_01770 0.21 +0.0
419,105 + CA264_01770 0.24 +0.0
419,110 + CA264_01770 0.24 -0.4
419,111 - CA264_01770 0.24 -0.5
419,131 - CA264_01770 0.25 +0.2
419,158 - CA264_01770 0.27 +0.4
419,200 + CA264_01770 0.29 -1.2
419,208 - CA264_01770 0.29 +0.5
419,223 + CA264_01770 0.30 +0.9
419,259 + CA264_01770 0.32 +0.1
419,259 + CA264_01770 0.32 -0.2
419,260 - CA264_01770 0.32 +1.1
419,270 + CA264_01770 0.33 -0.6
419,274 + CA264_01770 0.33 -1.2
419,274 + CA264_01770 0.33 -0.1
419,287 - CA264_01770 0.34 +0.3
419,289 + CA264_01770 0.34 -0.7
419,290 - CA264_01770 0.34 +0.9
419,305 + CA264_01770 0.35 -0.7
419,341 + CA264_01770 0.37 +1.0
419,342 - CA264_01770 0.37 +0.2
419,348 + CA264_01770 0.37 -0.2
419,372 - CA264_01770 0.38 +0.1
419,426 - CA264_01770 0.41 +0.2
419,432 + CA264_01770 0.42 +0.3
419,454 + CA264_01770 0.43 +1.1
419,454 + CA264_01770 0.43 +0.1
419,455 - CA264_01770 0.43 +0.4
419,494 + CA264_01770 0.45 -0.6
419,497 - CA264_01770 0.45 +0.9

Or see this region's nucleotide sequence