Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01625

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01620 and CA264_01625 are separated by 196 nucleotidesCA264_01625 and CA264_01630 are separated by 368 nucleotides CA264_01620: CA264_01620 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase, at 380,031 to 380,924 _01620 CA264_01625: CA264_01625 - hypothetical protein, at 381,121 to 381,732 _01625 CA264_01630: CA264_01630 - TonB dependent receptor, at 382,101 to 384,557 _01630 Position (kb) 381 382Strain fitness (log2 ratio) -2 -1 0 1 2at 380.922 kb on + strandat 380.923 kb on - strandat 380.937 kb on + strandat 380.939 kb on + strandat 380.944 kb on - strandat 380.944 kb on - strandat 380.988 kb on - strandat 381.042 kb on - strandat 381.045 kb on + strandat 381.045 kb on + strandat 381.045 kb on + strandat 381.046 kb on - strandat 381.071 kb on - strandat 381.071 kb on - strandat 381.124 kb on + strandat 381.145 kb on - strandat 381.212 kb on + strand, within CA264_01625at 381.212 kb on + strand, within CA264_01625at 381.217 kb on + strand, within CA264_01625at 381.218 kb on - strand, within CA264_01625at 381.287 kb on - strand, within CA264_01625at 381.357 kb on - strand, within CA264_01625at 381.357 kb on - strand, within CA264_01625at 381.378 kb on - strand, within CA264_01625at 381.434 kb on + strand, within CA264_01625at 381.434 kb on + strand, within CA264_01625at 381.434 kb on + strand, within CA264_01625at 381.434 kb on + strand, within CA264_01625at 381.435 kb on - strand, within CA264_01625at 381.435 kb on - strand, within CA264_01625at 381.438 kb on + strand, within CA264_01625at 381.439 kb on - strand, within CA264_01625at 381.440 kb on + strand, within CA264_01625at 381.440 kb on + strand, within CA264_01625at 381.440 kb on + strand, within CA264_01625at 381.440 kb on + strand, within CA264_01625at 381.441 kb on - strand, within CA264_01625at 381.441 kb on - strand, within CA264_01625at 381.441 kb on - strand, within CA264_01625at 381.441 kb on - strand, within CA264_01625at 381.461 kb on + strand, within CA264_01625at 381.462 kb on - strand, within CA264_01625at 381.462 kb on - strand, within CA264_01625at 381.524 kb on - strand, within CA264_01625at 381.616 kb on + strand, within CA264_01625at 381.616 kb on + strand, within CA264_01625at 381.617 kb on - strand, within CA264_01625at 381.739 kb on + strandat 381.739 kb on + strandat 381.739 kb on + strandat 381.740 kb on - strandat 381.740 kb on - strandat 381.749 kb on + strandat 381.754 kb on + strandat 381.755 kb on - strandat 381.767 kb on - strandat 381.790 kb on - strandat 381.814 kb on + strandat 381.935 kb on + strandat 381.935 kb on + strandat 381.935 kb on + strandat 381.936 kb on - strandat 381.936 kb on - strandat 381.963 kb on - strandat 381.965 kb on + strandat 381.965 kb on + strandat 382.017 kb on + strandat 382.017 kb on + strandat 382.020 kb on + strandat 382.021 kb on - strandat 382.041 kb on + strandat 382.041 kb on + strandat 382.042 kb on - strandat 382.044 kb on - strandat 382.075 kb on + strandat 382.083 kb on + strandat 382.096 kb on - strandat 382.175 kb on + strandat 382.204 kb on + strandat 382.204 kb on + strandat 382.204 kb on + strandat 382.285 kb on + strandat 382.286 kb on - strandat 382.286 kb on - strandat 382.295 kb on + strandat 382.296 kb on - strandat 382.297 kb on + strandat 382.297 kb on + strandat 382.298 kb on - strandat 382.426 kb on + strand, within CA264_01630at 382.441 kb on - strand, within CA264_01630at 382.486 kb on + strand, within CA264_01630at 382.487 kb on - strand, within CA264_01630at 382.487 kb on - strand, within CA264_01630at 382.490 kb on + strand, within CA264_01630at 382.491 kb on - strand, within CA264_01630at 382.492 kb on + strand, within CA264_01630at 382.492 kb on + strand, within CA264_01630at 382.493 kb on - strand, within CA264_01630at 382.542 kb on + strand, within CA264_01630at 382.543 kb on - strand, within CA264_01630at 382.543 kb on - strand, within CA264_01630at 382.543 kb on - strand, within CA264_01630

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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380,922 + +0.8
380,923 - -1.3
380,937 + +0.4
380,939 + +0.3
380,944 - -0.6
380,944 - -1.2
380,988 - +0.2
381,042 - +0.7
381,045 + +0.7
381,045 + +0.1
381,045 + +0.1
381,046 - +0.3
381,071 - -0.4
381,071 - +0.6
381,124 + +0.8
381,145 - +0.2
381,212 + CA264_01625 0.15 +0.4
381,212 + CA264_01625 0.15 +0.3
381,217 + CA264_01625 0.16 +0.0
381,218 - CA264_01625 0.16 +0.7
381,287 - CA264_01625 0.27 -0.3
381,357 - CA264_01625 0.39 +0.3
381,357 - CA264_01625 0.39 +0.2
381,378 - CA264_01625 0.42 -0.1
381,434 + CA264_01625 0.51 -0.1
381,434 + CA264_01625 0.51 -0.2
381,434 + CA264_01625 0.51 +1.0
381,434 + CA264_01625 0.51 -0.5
381,435 - CA264_01625 0.51 +0.4
381,435 - CA264_01625 0.51 +0.2
381,438 + CA264_01625 0.52 -1.3
381,439 - CA264_01625 0.52 +0.5
381,440 + CA264_01625 0.52 +0.3
381,440 + CA264_01625 0.52 +0.0
381,440 + CA264_01625 0.52 +0.5
381,440 + CA264_01625 0.52 +0.3
381,441 - CA264_01625 0.52 +1.6
381,441 - CA264_01625 0.52 +0.3
381,441 - CA264_01625 0.52 -0.7
381,441 - CA264_01625 0.52 +0.1
381,461 + CA264_01625 0.56 -0.3
381,462 - CA264_01625 0.56 -0.6
381,462 - CA264_01625 0.56 +0.9
381,524 - CA264_01625 0.66 -0.2
381,616 + CA264_01625 0.81 +0.2
381,616 + CA264_01625 0.81 +0.1
381,617 - CA264_01625 0.81 +0.3
381,739 + +0.2
381,739 + -1.1
381,739 + +0.5
381,740 - -1.7
381,740 - -0.1
381,749 + +0.2
381,754 + -0.1
381,755 - -1.9
381,767 - +0.9
381,790 - -0.1
381,814 + -0.0
381,935 + -0.4
381,935 + +0.5
381,935 + +0.1
381,936 - +0.7
381,936 - -0.2
381,963 - -0.9
381,965 + -1.3
381,965 + +0.1
382,017 + -0.7
382,017 + -0.7
382,020 + -0.1
382,021 - +0.7
382,041 + +1.8
382,041 + +0.0
382,042 - +0.1
382,044 - -1.1
382,075 + +0.6
382,083 + +0.7
382,096 - +0.5
382,175 + +2.6
382,204 + -0.3
382,204 + -1.1
382,204 + -0.4
382,285 + +0.4
382,286 - -0.4
382,286 - +0.3
382,295 + +0.1
382,296 - +1.3
382,297 + +0.8
382,297 + -0.0
382,298 - -0.2
382,426 + CA264_01630 0.13 +0.2
382,441 - CA264_01630 0.14 +0.6
382,486 + CA264_01630 0.16 -0.9
382,487 - CA264_01630 0.16 -0.7
382,487 - CA264_01630 0.16 -0.2
382,490 + CA264_01630 0.16 -0.2
382,491 - CA264_01630 0.16 -1.5
382,492 + CA264_01630 0.16 -0.1
382,492 + CA264_01630 0.16 +0.4
382,493 - CA264_01630 0.16 -0.9
382,542 + CA264_01630 0.18 -0.2
382,543 - CA264_01630 0.18 +0.2
382,543 - CA264_01630 0.18 -0.2
382,543 - CA264_01630 0.18 +0.1

Or see this region's nucleotide sequence