Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01550 and CA264_01555 are separated by 4 nucleotides CA264_01555 and CA264_01560 are separated by 220 nucleotides
CA264_01550: CA264_01550 - aminotransferase, at 366,039 to 367,220
_01550
CA264_01555: CA264_01555 - hypothetical protein, at 367,225 to 368,091
_01555
CA264_01560: CA264_01560 - hypothetical protein, at 368,312 to 369,418
_01560
Position (kb) 367
368
369 Strain fitness (log2 ratio) -2
-1
0
1
2 at 366.285 kb on + strand, within CA264_01550 at 366.286 kb on - strand, within CA264_01550 at 366.329 kb on - strand, within CA264_01550 at 366.417 kb on + strand, within CA264_01550 at 366.439 kb on - strand, within CA264_01550 at 366.439 kb on - strand, within CA264_01550 at 366.498 kb on - strand, within CA264_01550 at 366.550 kb on - strand, within CA264_01550 at 366.551 kb on + strand, within CA264_01550 at 366.556 kb on - strand, within CA264_01550 at 366.642 kb on + strand, within CA264_01550 at 366.659 kb on + strand, within CA264_01550 at 366.698 kb on - strand, within CA264_01550 at 366.717 kb on + strand, within CA264_01550 at 366.718 kb on - strand, within CA264_01550 at 366.790 kb on + strand, within CA264_01550 at 366.896 kb on + strand, within CA264_01550 at 366.961 kb on + strand, within CA264_01550 at 366.962 kb on - strand, within CA264_01550 at 366.962 kb on - strand, within CA264_01550 at 366.973 kb on + strand, within CA264_01550 at 367.090 kb on - strand, within CA264_01550 at 367.090 kb on - strand, within CA264_01550 at 367.090 kb on - strand, within CA264_01550 at 367.175 kb on - strand at 367.208 kb on + strand at 367.212 kb on + strand at 367.212 kb on + strand at 367.213 kb on - strand at 367.260 kb on + strand at 367.271 kb on - strand at 367.386 kb on - strand, within CA264_01555 at 367.432 kb on + strand, within CA264_01555 at 367.568 kb on + strand, within CA264_01555 at 367.616 kb on + strand, within CA264_01555 at 367.617 kb on - strand, within CA264_01555 at 367.660 kb on + strand, within CA264_01555 at 367.661 kb on - strand, within CA264_01555 at 367.661 kb on - strand, within CA264_01555 at 367.785 kb on + strand, within CA264_01555 at 367.786 kb on - strand, within CA264_01555 at 367.786 kb on - strand, within CA264_01555 at 367.889 kb on + strand, within CA264_01555 at 368.005 kb on + strand at 368.148 kb on - strand at 368.150 kb on - strand at 368.173 kb on + strand at 368.174 kb on - strand at 368.180 kb on - strand at 368.215 kb on + strand at 368.216 kb on - strand at 368.285 kb on - strand at 368.308 kb on + strand at 368.334 kb on - strand at 368.411 kb on - strand at 368.412 kb on + strand at 368.413 kb on - strand at 368.413 kb on - strand at 368.478 kb on - strand, within CA264_01560 at 368.478 kb on - strand, within CA264_01560 at 368.594 kb on + strand, within CA264_01560 at 368.601 kb on + strand, within CA264_01560 at 368.621 kb on + strand, within CA264_01560
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 366,285 + CA264_01550 0.21 -0.2 366,286 - CA264_01550 0.21 +0.8 366,329 - CA264_01550 0.25 -0.4 366,417 + CA264_01550 0.32 +0.7 366,439 - CA264_01550 0.34 -1.1 366,439 - CA264_01550 0.34 -1.0 366,498 - CA264_01550 0.39 -0.8 366,550 - CA264_01550 0.43 -0.7 366,551 + CA264_01550 0.43 -0.9 366,556 - CA264_01550 0.44 -0.3 366,642 + CA264_01550 0.51 -1.4 366,659 + CA264_01550 0.52 -1.1 366,698 - CA264_01550 0.56 -0.7 366,717 + CA264_01550 0.57 -1.1 366,718 - CA264_01550 0.57 +0.0 366,790 + CA264_01550 0.64 -0.3 366,896 + CA264_01550 0.73 -0.9 366,961 + CA264_01550 0.78 -0.5 366,962 - CA264_01550 0.78 +0.3 366,962 - CA264_01550 0.78 -0.4 366,973 + CA264_01550 0.79 +1.1 367,090 - CA264_01550 0.89 -1.2 367,090 - CA264_01550 0.89 -0.2 367,090 - CA264_01550 0.89 +0.3 367,175 - -0.3 367,208 + -0.8 367,212 + +0.5 367,212 + -0.3 367,213 - -0.1 367,260 + +0.2 367,271 - -1.1 367,386 - CA264_01555 0.19 +0.4 367,432 + CA264_01555 0.24 -0.3 367,568 + CA264_01555 0.40 -2.7 367,616 + CA264_01555 0.45 -1.2 367,617 - CA264_01555 0.45 -0.7 367,660 + CA264_01555 0.50 +2.3 367,661 - CA264_01555 0.50 +0.3 367,661 - CA264_01555 0.50 +0.5 367,785 + CA264_01555 0.65 +0.9 367,786 - CA264_01555 0.65 -0.9 367,786 - CA264_01555 0.65 +0.9 367,889 + CA264_01555 0.77 -0.4 368,005 + +1.4 368,148 - -0.2 368,150 - +0.4 368,173 + +0.0 368,174 - +0.7 368,180 - -0.7 368,215 + -0.0 368,216 - +1.3 368,285 - -0.3 368,308 + +0.3 368,334 - +0.8 368,411 - +0.9 368,412 + +0.7 368,413 - -0.4 368,413 - +0.2 368,478 - CA264_01560 0.15 +0.4 368,478 - CA264_01560 0.15 +1.1 368,594 + CA264_01560 0.25 -1.2 368,601 + CA264_01560 0.26 -0.3 368,621 + CA264_01560 0.28 -1.0
Or see this region's nucleotide sequence